BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= kshv-miR-k12-10b
         (8 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_0396 | kshv-miR-k12-10b | Kaposi sarcoma-associated herpesvirus    16   0.25 
VMR_1273 | wssv-miR129 | White Spot Syndrome virus                     14   0.99 
VMR_0391 | kshv-miR-k10b_+1_5 | Kaposi sarcoma-associated herpes...    14   0.99 
VMR_1216 | tumv-miR-s36 | Turnip mosaic virus                          12   3.9  
VMR_1167 | sgiv-miR-12 | Singapore grouper iridovirus                  12   3.9  
VMR_1096 | rrv-miR-rr1-15-3p | Rhesus rhadinovirus                     12   3.9  
VMR_1095 | rrv-miR-rr1-15-3p | Rhesus rhadinovirus                     12   3.9  
VMR_0782 | prv-miR-8-3p | Pseudorabies virus                           12   3.9  
VMR_0532 | mghv-miR-m1-12 | Mouse gammaherpesvirus 68                  12   3.9  
VMR_0522 | mdv2-miR-m30 | Mareks disease virus type 2                  12   3.9  
VMR_0394 | kshv-miR-k12-10a | Kaposi sarcoma-associated herpesvirus    12   3.9  
>VMR_0396 | kshv-miR-k12-10b | Kaposi sarcoma-associated
         herpesvirus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tggtgttg 8
         ||||||||
Sbjct: 1 tggtgttg 8
>VMR_1273 | wssv-miR129 | White Spot Syndrome virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 2 tggtgtt 8
>VMR_0391 | kshv-miR-k10b_+1_5 | Kaposi sarcoma-associated
         herpesvirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tggtgtt 7
         |||||||
Sbjct: 2 tggtgtt 8
>VMR_1216 | tumv-miR-s36 | Turnip mosaic virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 1 ggtgtt 6
>VMR_1167 | sgiv-miR-12 | Singapore grouper iridovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 8 tggtgt 3
>VMR_1096 | rrv-miR-rr1-15-3p | Rhesus rhadinovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 gtgttg 8
         ||||||
Sbjct: 3 gtgttg 8
>VMR_1095 | rrv-miR-rr1-15-3p | Rhesus rhadinovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 gtgttg 8
         ||||||
Sbjct: 3 gtgttg 8
>VMR_0782 | prv-miR-8-3p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ggtgtt 7
         ||||||
Sbjct: 1 ggtgtt 6
>VMR_0532 | mghv-miR-m1-12 | Mouse gammaherpesvirus 68
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tggtgt 6
         ||||||
Sbjct: 3 tggtgt 8
>VMR_0522 | mdv2-miR-m30 | Mareks disease virus type 2
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 3 gtgttg 8
         ||||||
Sbjct: 6 gtgttg 1
>VMR_0394 | kshv-miR-k12-10a | Kaposi sarcoma-associated
         herpesvirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 gtgttg 8
         ||||||
Sbjct: 3 gtgttg 8
  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 15
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 100.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space:    20928
Effective search space used:    20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)