BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-13-5p
         (7 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_1236 | tumv-miR-s54 | Turnip mosaic virus                          14   0.74 
VMR_1087 | rrv-miR-rr1-13-5p | Rhesus rhadinovirus                     14   0.74 
VMR_1266 | tumv-miR-s81 | Turnip mosaic virus                          12   2.9  
VMR_1086 | rrv-miR-rr1-13-5p | Rhesus rhadinovirus                     12   2.9  
>VMR_1236 | tumv-miR-s54 | Turnip mosaic virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgcagt 7
         |||||||
Sbjct: 1 ttgcagt 7
>VMR_1087 | rrv-miR-rr1-13-5p | Rhesus rhadinovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ttgcagt 7
         |||||||
Sbjct: 2 ttgcagt 8
>VMR_1266 | tumv-miR-s81 | Turnip mosaic virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttgcag 6
         ||||||
Sbjct: 3 ttgcag 8
>VMR_1086 | rrv-miR-rr1-13-5p | Rhesus rhadinovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ttgcag 6
         ||||||
Sbjct: 3 ttgcag 8
  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 6
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 7
Length of database: 10,464
Length adjustment: 4
Effective length of query: 3
Effective length of database: 5232
Effective search space:    15696
Effective search space used:    15696
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)