BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h13
(7 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0485 | mdv1-miR-m9-5p | Mareks disease virus type 1 14 0.74
VMR_0355 | hvt-miR-h13 | Herpesvirus of turkeys 14 0.74
VMR_0915 | rcmv-miR-r1-2 | Rat cytomegalovirus 12 2.9
VMR_0914 | rcmv-miR-r1-2 | Rat cytomegalovirus 12 2.9
VMR_0497 | mdv2-miR-m18-5p_-1_5 | Mareks disease virus type 2 12 2.9
VMR_0377 | hvt-miR-h9-5p | Herpesvirus of turkeys 12 2.9
>VMR_0485 | mdv1-miR-m9-5p | Mareks disease virus type 1
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttctcc 7
|||||||
Sbjct: 2 tttctcc 8
>VMR_0355 | hvt-miR-h13 | Herpesvirus of turkeys
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttctcc 7
|||||||
Sbjct: 2 tttctcc 8
>VMR_0915 | rcmv-miR-r1-2 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 1 tttctc 6
>VMR_0914 | rcmv-miR-r1-2 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 1 tttctc 6
>VMR_0497 | mdv2-miR-m18-5p_-1_5 | Mareks disease virus type 2
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 3 tttctc 8
>VMR_0377 | hvt-miR-h9-5p | Herpesvirus of turkeys
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tttctc 6
||||||
Sbjct: 1 tttctc 6
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 11
Number of extensions: 9
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 7
Length of database: 10,464
Length adjustment: 4
Effective length of query: 3
Effective length of database: 5232
Effective search space: 15696
Effective search space used: 15696
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)
