| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaatgggc | 8 | ||
| MIMAT0035237 | hbr-miR482b | 2 | _....... | 8 | 87 |
| MIMAT0031718 | bbe-miR-71-3p | 7 | ......._ | 1 | 87 |
| MIMAT0025293 | hbr-miR6484 | 2 | _....... | 8 | 87 |
| MIMAT0024784 | hbr-miR2118 | 2 | ......._ | 8 | 87 |
| MIMAT0020564 | osa-miR5076 | 2 | ......._ | 8 | 87 |
| MIMAT0019579 | pma-miR-4547-3p | 8 | _....... | 2 | 87 |
| MIMAT0019042 | hsa-miR-4506 | 1 | ......._ | 7 | 87 |
| MIMAT0019142 | bfl-miR-71-3p | 7 | ......._ | 1 | 87 |
| MIMAT0034691 | eca-miR-7177b | 1 | ......t. | 8 | 87 |
| MIMAT0030402 | ptc-miR7821 | 1 | .g...... | 8 | 87 |
| MIMAT0030277 | bdi-miR7708b-3p | 1 | ......c. | 8 | 87 |
| MIMAT0037011 | ssc-miR-9793-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036438 | ggo-miR-522-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036284 | chi-miR-660 | 8 | _......_ | 3 | 75 |
| MIMAT0036074 | chi-miR-224-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035154 | efu-miR-660 | 8 | _......_ | 3 | 75 |
| MIMAT0034105 | gra-miR8715 | 1 | __...... | 6 | 75 |
| MIMAT0033885 | atr-miR8596 | 1 | ......__ | 6 | 75 |
| MIMAT0033685 | sma-miR-8482-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033342 | str-miR-81b-5p | 1 | __...... | 6 | 75 |
| MIMAT0033232 | ppc-miR-8343-3p | 1 | __...... | 6 | 75 |
| MIMAT0033172 | ppc-miR-8317b-5p | 2 | __...... | 7 | 75 |
| MIMAT0033159 | ppc-miR-8364p-5p | 7 | ......__ | 2 | 75 |
| MIMAT0033138 | ppc-miR-8364o-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033089 | ppc-miR-8317a-5p | 1 | __...... | 6 | 75 |
| MIMAT0033059 | ppc-miR-8364q-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032589 | ssa-miR-29b-4-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031754 | bma-miR-5363 | 1 | __...... | 6 | 75 |
| MIMAT0031684 | bbe-miR-4863-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030962 | stu-miR8047 | 6 | ......__ | 1 | 75 |
| MIMAT0030933 | stu-miR8029 | 8 | ......__ | 3 | 75 |
| MIMAT0030772 | prd-miR-7939g-5p | 2 | __...... | 7 | 75 |
| MIMAT0030736 | prd-miR-7939j-5p | 2 | __...... | 7 | 75 |
| MIMAT0030652 | prd-miR-7939e-5p | 2 | __...... | 7 | 75 |
| MIMAT0030647 | prd-miR-7911a-3p | 2 | __...... | 7 | 75 |
| MIMAT0030642 | prd-miR-7939d-5p | 2 | __...... | 7 | 75 |
| MIMAT0030640 | prd-miR-7939f-5p | 2 | __...... | 7 | 75 |
| MIMAT0030636 | prd-miR-7939i-5p | 2 | __...... | 7 | 75 |
| MIMAT0030465 | prd-miR-5960-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032255 | rgl-miR7809 | 7 | _......_ | 2 | 75 |
| MIMAT0029857 | mmu-miR-7674-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028776 | mdo-miR-7372-5p | 1 | __...... | 6 | 75 |
| MIMAT0028611 | mdo-miR-7307-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028603 | mdo-miR-7304-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028097 | ddi-miR-7095-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027877 | mmu-miR-6987-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025025 | sma-miR-124a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027283 | ppe-miR482c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031166 | ppe-miR482b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027105 | mml-miR-4446-5p | 6 | ......__ | 1 | 75 |
| MIMAT0024164 | ggo-miR-660 | 8 | _......_ | 3 | 75 |
| MIMAT0023552 | ame-miR-2765-3p | 2 | _......_ | 7 | 75 |
| MIMAT0023389 | hco-miR-228 | 1 | ......__ | 6 | 75 |
| MIMAT0023340 | hco-miR-5896 | 1 | __...... | 6 | 75 |
| MIMAT0023019 | bra-miR5721 | 3 | ......__ | 8 | 75 |
| MIMAT0022198 | cel-miR-5553-3p | 3 | _......_ | 8 | 75 |
| MIMAT0022124 | osa-miR5491 | 3 | ......__ | 8 | 75 |
| MIMAT0021588 | asu-miR-5363-5p | 1 | __...... | 6 | 75 |
| MIMAT0021400 | rmi-miR-5327 | 1 | ......__ | 6 | 75 |
| MIMAT0020096 | bfl-miR-4863-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019787 | hsa-miR-4694-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019701 | hsa-miR-4641 | 7 | __...... | 2 | 75 |
| MIMAT0018041 | vvi-miR3633b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016633 | cin-miR-4072-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016534 | cin-miR-4020b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016262 | sja-miR-124-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016171 | ppy-miR-1246 | 1 | _......_ | 6 | 75 |
| MIMAT0016092 | ppy-miR-660 | 8 | _......_ | 3 | 75 |
| MIMAT0015978 | ppy-miR-522 | 2 | ......__ | 7 | 75 |
| MIMAT0014906 | mmu-miR-3092-3p | 2 | _......_ | 7 | 75 |
| MIMAT0013241 | eca-miR-660 | 8 | _......_ | 3 | 75 |
| MIMAT0012604 | bmo-miR-2753 | 3 | ......__ | 8 | 75 |
| MIMAT0011834 | bta-miR-2314 | 7 | __...... | 2 | 75 |
| MIMAT0011172 | pvu-miR482-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009727 | lgi-miR-1985 | 8 | ......__ | 3 | 75 |
| MIMAT0009716 | hru-miR-1985 | 8 | ......__ | 3 | 75 |
| MIMAT0008308 | ptr-miR-660 | 8 | _......_ | 3 | 75 |
| MIMAT0008206 | ptr-miR-522 | 2 | ......__ | 7 | 75 |
| MIMAT0006760 | cfa-miR-660 | 8 | _......_ | 3 | 75 |
| MIMAT0006499 | mml-miR-660-5p | 8 | _......_ | 3 | 75 |
| MIMAT0006382 | mml-miR-518e | 2 | ......__ | 7 | 75 |
| MIMAT0007315 | oan-miR-1422p-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004344 | bta-miR-660 | 8 | _......_ | 3 | 75 |
| MIMAT0015240 | cel-miR-788-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004834 | ppt-miR1221-3p | 8 | __...... | 3 | 75 |
| MIMAT0003338 | hsa-miR-660-5p | 8 | _......_ | 3 | 75 |
| MIMAT0017200 | rno-miR-224-3p | 1 | ......__ | 6 | 75 |
| MIMAT0002868 | hsa-miR-522-3p | 2 | ......__ | 7 | 75 |
| MIMAT0001479 | ame-miR-263a | 3 | ......__ | 8 | 75 |
| MIMAT0017062 | mmu-miR-224-3p | 1 | ......__ | 6 | 75 |
| MIMAT0020329 | cel-miR-233-5p | 8 | __...... | 3 | 75 |
| MIMAT0009198 | hsa-miR-224-3p | 2 | ......__ | 7 | 75 |
