| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagtcgga | 8 | ||
| MIMAT0011678 | ppc-miR-63h | 8 | ........ | 1 | 100 |
| MIMAT0019160 | spu-miR-92b-5p | 1 | ........ | 8 | 100 |
| MIMAT0022244 | sbi-miR5565f | 2 | _....... | 8 | 87 |
| MIMAT0009437 | mmu-miR-1964-3p | 7 | ......._ | 1 | 87 |
| MIMAT0033461 | str-miR-360-3p | 1 | .t...... | 8 | 87 |
| MIMAT0028826 | mdo-miR-7385a-5p | 1 | .g...... | 8 | 87 |
| MIMAT0022202 | mtr-miR5555-3p | 1 | ......t. | 8 | 87 |
| MIMAT0018857 | tca-miR-3880-3p | 8 | ......c. | 1 | 87 |
| MIMAT0017766 | esi-miR3461-3p | 8 | .g...... | 1 | 87 |
| MIMAT0037027 | ssc-miR-9809-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036257 | chi-miR-496-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035499 | bdi-miR9481b | 3 | _......_ | 8 | 75 |
| MIMAT0035487 | bdi-miR9481a | 3 | _......_ | 8 | 75 |
| MIMAT0035425 | nve-miR-9466 | 2 | _......_ | 7 | 75 |
| MIMAT0035254 | gsa-miR-1175-5p | 1 | __...... | 6 | 75 |
| MIMAT0035212 | dme-miR-9374-3p | 1 | _......_ | 6 | 75 |
| MIMAT0034836 | efu-miR-9231 | 3 | _......_ | 8 | 75 |
| MIMAT0034756 | eca-miR-9176 | 2 | ......__ | 7 | 75 |
| MIMAT0034358 | cfa-miR-8859b | 2 | __...... | 7 | 75 |
| MIMAT0034055 | gra-miR7484c | 3 | ......__ | 8 | 75 |
| MIMAT0033997 | gra-miR7486e | 6 | ......__ | 1 | 75 |
| MIMAT0033422 | str-miR-7880v-5p | 2 | __...... | 7 | 75 |
| MIMAT0033350 | str-miR-7880j-5p | 3 | __...... | 8 | 75 |
| MIMAT0033252 | ppc-miR-8350-5p | 8 | ......__ | 3 | 75 |
| MIMAT0033049 | ppc-miR-8275-5p | 8 | ......__ | 3 | 75 |
| MIMAT0030187 | bdi-miR7727-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025477 | hsa-miR-6510-3p | 8 | _......_ | 3 | 75 |
| MIMAT0023439 | hco-miR-5943 | 2 | __...... | 7 | 75 |
| MIMAT0023433 | hco-miR-5938 | 8 | _......_ | 3 | 75 |
| MIMAT0021402 | rmi-miR-5329 | 8 | ......__ | 3 | 75 |
| MIMAT0019949 | hsa-miR-4785 | 3 | _......_ | 8 | 75 |
| MIMAT0019319 | oar-miR-496-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019273 | oar-miR-495-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018242 | gma-miR4353 | 2 | ......__ | 7 | 75 |
| MIMAT0018040 | vvi-miR3634-3p | 8 | __...... | 3 | 75 |
| MIMAT0017716 | aly-miR3441-3p.2 | 8 | ......__ | 3 | 75 |
| MIMAT0013406 | mtr-miR2639 | 2 | _......_ | 7 | 75 |
| MIMAT0011436 | cel-miR-2210-3p | 3 | ......__ | 8 | 75 |
| MIMAT0009694 | aqu-miR-2018-5p | 2 | __...... | 7 | 75 |
| MIMAT0006889 | oan-miR-1422g-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015108 | cel-miR-75-5p | 2 | _......_ | 7 | 75 |
