| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acggggcg | 8 | ||
| MIMAT0012171 | hbv-miR-B4 | 1 | ........ | 8 | 100 |
| MIMAT0036730 | oha-miR-146b-3p | 7 | ......._ | 1 | 87 |
| MIMAT0030644 | prd-miR-7927b-5p | 1 | _....... | 7 | 87 |
| MIMAT0030612 | prd-miR-7927d-5p | 1 | _....... | 7 | 87 |
| MIMAT0030610 | prd-miR-7927c-5p | 1 | _....... | 7 | 87 |
| MIMAT0030546 | prd-miR-7927a-5p | 1 | _....... | 7 | 87 |
| MIMAT0028704 | mdo-miR-7346-5p | 1 | _....... | 7 | 87 |
| MIMAT0021776 | aca-miR-146a-3p | 7 | ......._ | 1 | 87 |
| MIMAT0018760 | tca-miR-3852-5p | 1 | ......._ | 7 | 87 |
| MIMAT0015080 | hsa-miR-3196 | 1 | _....... | 7 | 87 |
| MIMAT0027838 | mmu-miR-6968-5p | 1 | .g...... | 8 | 87 |
| MIMAT0027454 | hsa-miR-6777-5p | 1 | ......a. | 8 | 87 |
| MIMAT0022017 | aca-miR-5404 | 8 | ......g. | 1 | 87 |
| MIMAT0019791 | hsa-miR-4697-5p | 1 | .g...... | 8 | 87 |
| MIMAT0019022 | hsa-miR-4488 | 1 | .g...... | 8 | 87 |
| MIMAT0011856 | bta-miR-2327 | 1 | .g...... | 8 | 87 |
| MIMAT0005394 | cre-miR1151a-3p | 1 | ......t. | 8 | 87 |
| MIMAT0036922 | oha-miR-425-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036697 | oha-miR-1329-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036678 | oha-miR-128-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036553 | tch-miR-486-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035933 | chi-miR-128-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035752 | rno-miR-762 | 2 | _......_ | 7 | 75 |
| MIMAT0034985 | efu-miR-4667 | 3 | __...... | 8 | 75 |
| MIMAT0034786 | efu-miR-9200b | 2 | ......__ | 7 | 75 |
| MIMAT0034644 | eca-miR-744 | 3 | _......_ | 8 | 75 |
| MIMAT0034035 | gra-miR7486d | 3 | __...... | 8 | 75 |
| MIMAT0033777 | pxy-miR-8532-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033075 | ppc-miR-8285-5p | 8 | __...... | 3 | 75 |
| MIMAT0032316 | ssa-miR-128-3-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032315 | ssa-miR-128-2-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032313 | ssa-miR-128-1-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031339 | stu-miR408b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028999 | oan-miR-7424-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028608 | mdo-miR-128b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028529 | mdo-miR-7277-3p | 1 | _......_ | 6 | 75 |
| MIMAT0026409 | sbi-miR6221-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028072 | mmu-miR-7083-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028000 | mmu-miR-7048-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027590 | hsa-miR-6845-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027532 | hsa-miR-6816-5p | 2 | __...... | 7 | 75 |
| MIMAT0027468 | hsa-miR-6784-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027450 | hsa-miR-6775-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027424 | hsa-miR-6762-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027355 | hsa-miR-6727-5p | 3 | _......_ | 8 | 75 |
| MIMAT0024864 | mmu-miR-6244 | 2 | __...... | 7 | 75 |
| MIMAT0024002 | cgr-miR-744-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023968 | cgr-miR-486-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023749 | cgr-miR-128-5p | 1 | _......_ | 6 | 75 |
| MIMAT0023416 | hco-miR-5930 | 3 | __...... | 8 | 75 |
| MIMAT0022290 | hsa-miR-5587-3p | 6 | _......_ | 1 | 75 |
| MIMAT0021955 | aca-miR-425-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021082 | hsa-miR-5090 | 2 | _......_ | 7 | 75 |
| MIMAT0019886 | hsa-miR-4749-3p | 6 | __...... | 1 | 75 |
| MIMAT0019807 | hsa-miR-4707-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019623 | pma-miR-4590 | 1 | ......__ | 6 | 75 |
| MIMAT0019045 | hsa-miR-4508 | 2 | _......_ | 7 | 75 |
| MIMAT0018178 | hsa-miR-3180 | 2 | __...... | 7 | 75 |
| MIMAT0016102 | ppy-miR-744 | 3 | _......_ | 8 | 75 |
| MIMAT0015708 | ssc-miR-744 | 3 | _......_ | 8 | 75 |
| MIMAT0015058 | hsa-miR-3180-3p | 2 | __...... | 7 | 75 |
| MIMAT0015055 | hsa-miR-3178 | 1 | __...... | 6 | 75 |
| MIMAT0014944 | mmu-miR-486b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014693 | hsv1-miR-H15 | 7 | _......_ | 2 | 75 |
| MIMAT0031084 | tgu-miR-128-1-5p | 1 | _......_ | 6 | 75 |
| MIMAT0015355 | zma-miR398b-5p | 1 | __...... | 6 | 75 |
| MIMAT0015354 | zma-miR398a-5p | 1 | __...... | 6 | 75 |
| MIMAT0013848 | bta-miR-2890 | 6 | _......_ | 1 | 75 |
| MIMAT0013839 | bta-miR-2881 | 1 | __...... | 6 | 75 |
| MIMAT0013187 | eca-miR-486-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012207 | dme-miR-2496-3p | 2 | _......_ | 7 | 75 |
| MIMAT0012046 | bta-miR-1777b | 2 | __...... | 7 | 75 |
| MIMAT0012032 | bta-miR-1777a | 3 | __...... | 8 | 75 |
| MIMAT0012005 | bta-miR-2433 | 3 | __...... | 8 | 75 |
| MIMAT0009369 | bta-miR-744 | 3 | _......_ | 8 | 75 |
| MIMAT0008317 | ptr-miR-744 | 3 | _......_ | 8 | 75 |
| MIMAT0032036 | cfa-miR-486-3p | 2 | _......_ | 7 | 75 |
| MIMAT0006345 | mml-miR-486-3p | 1 | _......_ | 6 | 75 |
| MIMAT0007613 | gga-miR-1716 | 3 | _......_ | 8 | 75 |
| MIMAT0007473 | gga-miR-1607 | 2 | __...... | 7 | 75 |
| MIMAT0007459 | gga-miR-1595-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007196 | oan-miR-1394 | 3 | _......_ | 8 | 75 |
| MIMAT0022946 | hsa-miR-1237-5p | 3 | __...... | 8 | 75 |
| MIMAT0005541 | mcmv-miR-m22-1 | 8 | ......__ | 3 | 75 |
| MIMAT0005395 | cre-miR1151b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005393 | cre-miR1151a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004945 | hsa-miR-744-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004824 | mmu-miR-673-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004187 | mmu-miR-744-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017206 | mmu-miR-486a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0026565 | mml-miR-128a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004762 | hsa-miR-486-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031967 | dre-miR-128-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031096 | gga-miR-128-1-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017118 | rno-miR-128-1-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026477 | hsa-miR-128-1-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016982 | mmu-miR-128-1-5p | 1 | _......_ | 6 | 75 |
