| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acggtca | 7 | ||
| MIMAT0029964 | mtr-miR2587g | 8 | ....... | 2 | 100 |
| MIMAT0023835 | cgr-miR-1973 | 7 | ....... | 1 | 100 |
| MIMAT0013257 | mtr-miR2587f | 8 | ....... | 2 | 100 |
| MIMAT0013256 | mtr-miR2587e | 8 | ....... | 2 | 100 |
| MIMAT0013255 | mtr-miR2587d | 8 | ....... | 2 | 100 |
| MIMAT0013254 | mtr-miR2587c | 8 | ....... | 2 | 100 |
| MIMAT0013253 | mtr-miR2587b | 8 | ....... | 2 | 100 |
| MIMAT0013252 | mtr-miR2587a | 8 | ....... | 2 | 100 |
| MIMAT0001303 | cbr-miR-360 | 7 | ....... | 1 | 100 |
| MIMAT0000702 | cel-miR-360-3p | 7 | ....... | 1 | 100 |
| MIMAT0037137 | ata-miR169c-3p | 3 | _...... | 8 | 85 |
| MIMAT0036881 | oha-miR-29a-2-5p | 6 | _...... | 1 | 85 |
| MIMAT0036743 | oha-miR-15b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036116 | chi-miR-29c-5p | 6 | _...... | 1 | 85 |
| MIMAT0035656 | bra-miR9552b-3p | 6 | _...... | 1 | 85 |
| MIMAT0035507 | bdi-miR9498 | 6 | ......_ | 1 | 85 |
| MIMAT0033542 | sma-miR-8419-5p | 8 | _...... | 3 | 85 |
| MIMAT0030513 | prd-miR-7878-3p | 1 | ......_ | 6 | 85 |
| MIMAT0029567 | ipu-miR-7568 | 7 | _...... | 2 | 85 |
| MIMAT0027813 | mmu-miR-6956-3p | 6 | _...... | 1 | 85 |
| MIMAT0025300 | mja-miR-6492 | 8 | _...... | 3 | 85 |
| MIMAT0024792 | hbr-miR6172 | 8 | ......_ | 3 | 85 |
| MIMAT0022109 | pti-miR5476 | 6 | _...... | 1 | 85 |
| MIMAT0021913 | aca-miR-29a-2-5p | 6 | _...... | 1 | 85 |
| MIMAT0021791 | aca-miR-15b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020725 | bdi-miR5178-3p | 8 | _...... | 3 | 85 |
| MIMAT0019682 | osa-miR812o-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018641 | tca-miR-3809-3p | 3 | _...... | 8 | 85 |
| MIMAT0016565 | cin-miR-4038-5p | 1 | _...... | 6 | 85 |
| MIMAT0031063 | tgu-miR-29a-2-5p | 6 | _...... | 1 | 85 |
| MIMAT0020948 | osa-miR2871a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0026919 | bta-miR-29d-5p | 6 | _...... | 1 | 85 |
| MIMAT0009167 | oan-miR-29a-2-5p | 6 | _...... | 1 | 85 |
| MIMAT0005560 | mcmv-miR-m108-2-5p.1 | 2 | _...... | 7 | 85 |
| MIMAT0005555 | mcmv-miR-m107-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0005551 | mcmv-miR-m88-1-5p | 7 | _...... | 2 | 85 |
| MIMAT0003676 | xtr-miR-29c-5p | 6 | _...... | 1 | 85 |
| MIMAT0004756 | hcmv-miR-US33-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003154 | rno-miR-29c-5p | 6 | _...... | 1 | 85 |
| MIMAT0004673 | hsa-miR-29c-5p | 6 | _...... | 1 | 85 |
| MIMAT0004632 | mmu-miR-29c-5p | 6 | _...... | 1 | 85 |
