| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | actatagt | 8 | ||
| MIMAT0021616 | gma-miR5375 | 1 | ......._ | 7 | 87 |
| MIMAT0021616 | gma-miR5375 | 7 | _....... | 1 | 87 |
| MIMAT0004808 | hsa-miR-625-3p | 2 | ......._ | 8 | 87 |
| MIMAT0004808 | hsa-miR-625-3p | 8 | _....... | 2 | 87 |
| MIMAT0036963 | oha-miR-98-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036963 | oha-miR-98-3p | 7 | __...... | 2 | 75 |
| MIMAT0036773 | oha-miR-190a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036773 | oha-miR-190a-3p | 6 | __...... | 1 | 75 |
| MIMAT0036645 | oha-let-7e-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036645 | oha-let-7e-3p | 8 | __...... | 3 | 75 |
| MIMAT0036639 | oha-let-7a-3-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036639 | oha-let-7a-3-3p | 7 | __...... | 2 | 75 |
| MIMAT0036629 | oha-let-7f-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036629 | oha-let-7f-1-3p | 8 | __...... | 3 | 75 |
| MIMAT0036627 | oha-let-7a-2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036627 | oha-let-7a-2-3p | 8 | __...... | 3 | 75 |
| MIMAT0035694 | bra-miR9567-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035694 | bra-miR9567-3p | 8 | __...... | 3 | 75 |
| MIMAT0035383 | nve-miR-9424a | 1 | __...... | 6 | 75 |
| MIMAT0035383 | nve-miR-9424a | 6 | ......__ | 1 | 75 |
| MIMAT0034133 | gra-miR7492m | 1 | _......_ | 6 | 75 |
| MIMAT0034133 | gra-miR7492m | 6 | _......_ | 1 | 75 |
| MIMAT0034132 | gra-miR7492l | 1 | _......_ | 6 | 75 |
| MIMAT0034132 | gra-miR7492l | 6 | _......_ | 1 | 75 |
| MIMAT0033694 | pxy-miR-8487 | 1 | __...... | 6 | 75 |
| MIMAT0033694 | pxy-miR-8487 | 6 | ......__ | 1 | 75 |
| MIMAT0033615 | sma-miR-8452-3p | 2 | __...... | 7 | 75 |
| MIMAT0033615 | sma-miR-8452-3p | 7 | ......__ | 2 | 75 |
| MIMAT0033572 | sma-miR-8434-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033572 | sma-miR-8434-5p | 7 | __...... | 2 | 75 |
| MIMAT0032437 | ssa-miR-190a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032437 | ssa-miR-190a-3p | 6 | __...... | 1 | 75 |
| MIMAT0032258 | rgl-miR7807b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032258 | rgl-miR7807b-5p | 8 | __...... | 3 | 75 |
| MIMAT0032250 | rgl-miR7807a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032250 | rgl-miR7807a-5p | 7 | __...... | 2 | 75 |
| MIMAT0029136 | ghr-miR7492c | 1 | _......_ | 6 | 75 |
| MIMAT0029136 | ghr-miR7492c | 6 | _......_ | 1 | 75 |
| MIMAT0029135 | ghr-miR7492b | 1 | _......_ | 6 | 75 |
| MIMAT0029135 | ghr-miR7492b | 6 | _......_ | 1 | 75 |
| MIMAT0029134 | ghr-miR7492a | 1 | _......_ | 6 | 75 |
| MIMAT0029134 | ghr-miR7492a | 6 | _......_ | 1 | 75 |
| MIMAT0024595 | bta-miR-6122-3p | 1 | ......__ | 6 | 75 |
| MIMAT0024595 | bta-miR-6122-3p | 6 | __...... | 1 | 75 |
| MIMAT0021822 | aca-miR-190a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0021822 | aca-miR-190a-3p | 6 | __...... | 1 | 75 |
| MIMAT0021702 | aca-let-7e-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021702 | aca-let-7e-3p | 8 | __...... | 3 | 75 |
| MIMAT0021615 | gma-miR5374-5p | 2 | __...... | 7 | 75 |
| MIMAT0021615 | gma-miR5374-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017886 | rno-miR-3596a | 2 | ......__ | 7 | 75 |
| MIMAT0017886 | rno-miR-3596a | 7 | __...... | 2 | 75 |
| MIMAT0017877 | rno-miR-3596c | 1 | ......__ | 6 | 75 |
| MIMAT0017877 | rno-miR-3596c | 6 | __...... | 1 | 75 |
| MIMAT0017649 | aly-miR860-5p | 2 | __...... | 7 | 75 |
| MIMAT0017649 | aly-miR860-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027015 | tgu-miR-190-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027015 | tgu-miR-190-3p | 6 | __...... | 1 | 75 |
| MIMAT0011916 | bta-miR-2371 | 1 | __...... | 6 | 75 |
| MIMAT0011916 | bta-miR-2371 | 6 | ......__ | 1 | 75 |
| MIMAT0011281 | sme-miR-2179-3p | 3 | ......__ | 8 | 75 |
| MIMAT0011281 | sme-miR-2179-3p | 8 | __...... | 3 | 75 |
| MIMAT0010006 | bfl-let-7b | 2 | ......__ | 7 | 75 |
| MIMAT0010006 | bfl-let-7b | 7 | __...... | 2 | 75 |
| MIMAT0007030 | oan-miR-1366 | 3 | _......_ | 8 | 75 |
| MIMAT0007030 | oan-miR-1366 | 8 | _......_ | 3 | 75 |
| MIMAT0006844 | oan-miR-190a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0006844 | oan-miR-190a-3p | 6 | __...... | 1 | 75 |
| MIMAT0017145 | rno-miR-190a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017145 | rno-miR-190a-3p | 6 | __...... | 1 | 75 |
| MIMAT0016998 | mmu-miR-190a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016998 | mmu-miR-190a-3p | 6 | __...... | 1 | 75 |
