| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agcgctc | 7 | ||
| MIMAT0028976 | oan-miR-7414-5p | 8 | ....... | 2 | 100 |
| MIMAT0028976 | oan-miR-7414-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036451 | ppy-miR-518g-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036451 | ppy-miR-518g-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036428 | ggo-miR-518e-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036428 | ggo-miR-518e-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035797 | tae-miR5384-3p | 7 | _...... | 2 | 85 |
| MIMAT0035361 | xtr-miR-9407 | 2 | _...... | 7 | 85 |
| MIMAT0035189 | efu-miR-339 | 7 | _...... | 2 | 85 |
| MIMAT0034743 | eca-miR-9165 | 2 | _...... | 7 | 85 |
| MIMAT0032749 | ssa-miR-8161-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032749 | ssa-miR-8161-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028985 | oan-miR-7418-3p | 8 | _...... | 3 | 85 |
| MIMAT0028339 | mml-miR-7190-3p | 1 | _...... | 6 | 85 |
| MIMAT0025595 | gga-miR-6546-5p | 8 | _...... | 3 | 85 |
| MIMAT0027121 | mml-miR-518d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027121 | mml-miR-518d-3p | 8 | ......_ | 3 | 85 |
| MIMAT0024161 | ggo-miR-339 | 7 | _...... | 2 | 85 |
| MIMAT0023367 | hco-miR-5911a | 3 | ......_ | 8 | 85 |
| MIMAT0023367 | hco-miR-5911a | 8 | ......_ | 3 | 85 |
| MIMAT0019998 | cel-miR-4812-5p | 8 | _...... | 3 | 85 |
| MIMAT0019686 | osa-miR3982-5p | 1 | _...... | 6 | 85 |
| MIMAT0016777 | cin-miR-4169-3p | 6 | _...... | 1 | 85 |
| MIMAT0015957 | ppy-miR-518e | 3 | ......_ | 8 | 85 |
| MIMAT0015957 | ppy-miR-518e | 8 | ......_ | 3 | 85 |
| MIMAT0014871 | mmu-miR-3081-3p | 3 | _...... | 8 | 85 |
| MIMAT0015353 | zma-miR397b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015353 | zma-miR397b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0013663 | bmo-miR-2777-3p | 7 | _...... | 2 | 85 |
| MIMAT0008190 | ptr-miR-518e | 3 | ......_ | 8 | 85 |
| MIMAT0008190 | ptr-miR-518e | 8 | ......_ | 3 | 85 |
| MIMAT0008107 | ptr-miR-339 | 7 | _...... | 2 | 85 |
| MIMAT0006383 | mml-miR-518f | 3 | ......_ | 8 | 85 |
| MIMAT0006383 | mml-miR-518f | 8 | ......_ | 3 | 85 |
| MIMAT0026891 | mml-miR-504-3p | 8 | _...... | 3 | 85 |
| MIMAT0006280 | mml-miR-339-3p | 7 | _...... | 2 | 85 |
| MIMAT0007673 | gga-miR-1765 | 8 | _...... | 3 | 85 |
| MIMAT0007344 | gga-miR-1466 | 1 | _...... | 6 | 85 |
| MIMAT0005418 | cre-miR1163.1 | 8 | _...... | 3 | 85 |
| MIMAT0003994 | sme-miR-124c-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0002861 | hsa-miR-518e-3p | 3 | ......_ | 8 | 85 |
| MIMAT0002861 | hsa-miR-518e-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004702 | hsa-miR-339-3p | 7 | _...... | 2 | 85 |
| MIMAT0004649 | mmu-miR-339-3p | 7 | _...... | 2 | 85 |
| MIMAT0004648 | rno-miR-339-3p | 7 | _...... | 2 | 85 |
