| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggcttg | 7 | ||
| MIMAT0028116 | hsa-miR-7109-3p | 7 | ....... | 1 | 100 |
| MIMAT0027949 | mmu-miR-7022-3p | 8 | ....... | 2 | 100 |
| MIMAT0016593 | cin-miR-4052-5p | 2 | ....... | 8 | 100 |
| MIMAT0012168 | sme-miR-753e-5p | 1 | ....... | 7 | 100 |
| MIMAT0011395 | sme-miR-753b-5p | 1 | ....... | 7 | 100 |
| MIMAT0001046 | osa-miR168b | 1 | ....... | 7 | 100 |
| MIMAT0037138 | ata-miR5200-5p | 6 | ......_ | 1 | 85 |
| MIMAT0036753 | oha-miR-1788-5p | 1 | _...... | 6 | 85 |
| MIMAT0035258 | gsa-miR-36-5p | 1 | _...... | 6 | 85 |
| MIMAT0035150 | efu-miR-9357 | 8 | _...... | 3 | 85 |
| MIMAT0034765 | eca-miR-9184 | 1 | _...... | 6 | 85 |
| MIMAT0034617 | eca-miR-9072 | 8 | ......_ | 3 | 85 |
| MIMAT0034567 | eca-miR-9025 | 2 | _...... | 7 | 85 |
| MIMAT0034259 | gra-miR8728 | 3 | _...... | 8 | 85 |
| MIMAT0033304 | str-miR-7880b-1-5p | 2 | _...... | 7 | 85 |
| MIMAT0032684 | ssa-miR-736-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032412 | ssa-miR-1788-5p | 1 | _...... | 6 | 85 |
| MIMAT0031541 | ppe-miR477-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030854 | stu-miR7985 | 3 | _...... | 8 | 85 |
| MIMAT0030352 | hhi-miR-1788 | 1 | _...... | 6 | 85 |
| MIMAT0029863 | mmu-miR-129b-3p | 6 | _...... | 1 | 85 |
| MIMAT0029433 | ipu-miR-1788 | 1 | _...... | 6 | 85 |
| MIMAT0028682 | mdo-miR-7337-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028585 | mdo-miR-7298-3p | 2 | _...... | 7 | 85 |
| MIMAT0027539 | hsa-miR-6819-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025407 | tgu-miR-1788 | 1 | _...... | 6 | 85 |
| MIMAT0025335 | pde-miR482c | 1 | _...... | 6 | 85 |
| MIMAT0024401 | ppy-miR-3188 | 3 | ......_ | 8 | 85 |
| MIMAT0023010 | bra-miR5713 | 1 | ......_ | 6 | 85 |
| MIMAT0022445 | ath-miR5643b | 1 | ......_ | 6 | 85 |
| MIMAT0022404 | ath-miR5643a | 1 | ......_ | 6 | 85 |
| MIMAT0021979 | aca-miR-497-3p | 6 | _...... | 1 | 85 |
| MIMAT0021805 | aca-miR-1788-5p | 1 | _...... | 6 | 85 |
| MIMAT0019561 | pma-miR-1788a-5p | 1 | _...... | 6 | 85 |
| MIMAT0018915 | smr-miR-282 | 6 | ......_ | 1 | 85 |
| MIMAT0018515 | ame-miR-3747a | 3 | ......_ | 8 | 85 |
| MIMAT0018150 | pab-miR482d | 1 | _...... | 6 | 85 |
| MIMAT0016889 | hsa-miR-4327 | 1 | _...... | 6 | 85 |
| MIMAT0016603 | cin-miR-4057-5p | 1 | _...... | 6 | 85 |
| MIMAT0016038 | ppy-miR-596 | 6 | ......_ | 1 | 85 |
| MIMAT0015070 | hsa-miR-3188 | 3 | ......_ | 8 | 85 |
| MIMAT0014864 | mmu-miR-3078-5p | 8 | ......_ | 3 | 85 |
| MIMAT0014481 | tgu-miR-2971 | 8 | ......_ | 3 | 85 |
| MIMAT0012807 | ptr-miR-596 | 6 | ......_ | 1 | 85 |
| MIMAT0013632 | bmo-miR-2760-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011861 | bta-miR-2330-5p | 3 | _...... | 8 | 85 |
| MIMAT0011294 | dre-miR-1788-5p | 1 | _...... | 6 | 85 |
| MIMAT0019110 | tca-miR-87a-5p | 2 | _...... | 7 | 85 |
| MIMAT0006775 | cel-miR-1833 | 3 | ......_ | 8 | 85 |
| MIMAT0007700 | gga-miR-1788-5p | 1 | _...... | 6 | 85 |
| MIMAT0007628 | gga-miR-1728-3p | 1 | ......_ | 6 | 85 |
| MIMAT0007476 | gga-miR-1610 | 2 | _...... | 7 | 85 |
| MIMAT0005287 | rno-miR-879-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005231 | smo-miR1081 | 3 | ......_ | 8 | 85 |
| MIMAT0003899 | ppt-miR477a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004842 | mmu-miR-879-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003937 | ath-miR778 | 2 | _...... | 7 | 85 |
| MIMAT0003264 | hsa-miR-596 | 6 | ......_ | 1 | 85 |
| MIMAT0015212 | kshv-miR-K12-10a-5p | 1 | _...... | 6 | 85 |
