| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtgttg | 7 | ||
| MIMAT0037226 | ata-miR2275c-5p | 1 | ....... | 7 | 100 |
| MIMAT0036269 | chi-miR-505-3p | 8 | ....... | 2 | 100 |
| MIMAT0030572 | prd-miR-5358b-5p | 2 | ....... | 8 | 100 |
| MIMAT0025103 | mmu-miR-6360 | 2 | ....... | 8 | 100 |
| MIMAT0023191 | gma-miR5785 | 2 | ....... | 8 | 100 |
| MIMAT0017895 | rno-miR-3592 | 2 | ....... | 8 | 100 |
| MIMAT0013961 | ssc-miR-505 | 8 | ....... | 2 | 100 |
| MIMAT0026760 | oan-miR-1398-3p | 1 | ....... | 7 | 100 |
| MIMAT0004477 | mdv2-miR-M30-5p | 7 | ....... | 1 | 100 |
| MIMAT0002179 | kshv-miR-K12-10a-3p | 2 | ....... | 8 | 100 |
| MIMAT0037110 | ata-miR2275a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036470 | tch-miR-142 | 3 | ......_ | 8 | 85 |
| MIMAT0036383 | gma-miR9746i | 3 | ......_ | 8 | 85 |
| MIMAT0036373 | gma-miR9746h | 3 | ......_ | 8 | 85 |
| MIMAT0036372 | gma-miR9746g | 3 | ......_ | 8 | 85 |
| MIMAT0036371 | gma-miR9746f | 3 | ......_ | 8 | 85 |
| MIMAT0036370 | gma-miR9746e | 3 | ......_ | 8 | 85 |
| MIMAT0036369 | gma-miR9746d | 3 | ......_ | 8 | 85 |
| MIMAT0036368 | gma-miR9746c | 3 | ......_ | 8 | 85 |
| MIMAT0036367 | gma-miR9746b | 3 | ......_ | 8 | 85 |
| MIMAT0036366 | gma-miR9746a | 3 | ......_ | 8 | 85 |
| MIMAT0036362 | gma-miR9742 | 2 | _...... | 7 | 85 |
| MIMAT0034735 | eca-miR-9158 | 3 | ......_ | 8 | 85 |
| MIMAT0034544 | eca-miR-9004 | 3 | ......_ | 8 | 85 |
| MIMAT0034477 | eca-miR-8948 | 3 | _...... | 8 | 85 |
| MIMAT0034273 | psj-miR8788b-3p | 1 | _...... | 6 | 85 |
| MIMAT0034271 | psj-miR8788a-3p | 1 | _...... | 6 | 85 |
| MIMAT0033525 | sma-miR-8410-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032781 | ath-miR8182 | 3 | _...... | 8 | 85 |
| MIMAT0032362 | ssa-miR-142a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0031577 | bbe-miR-124-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030733 | prd-miR-7937-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030042 | oar-miR-200a | 6 | ......_ | 1 | 85 |
| MIMAT0029419 | ipu-miR-142 | 3 | ......_ | 8 | 85 |
| MIMAT0029043 | gga-miR-7444-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028750 | mdo-miR-1545b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028663 | mdo-miR-505-3p | 8 | _...... | 3 | 85 |
| MIMAT0031066 | mdo-miR-199b-3-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031065 | mdo-miR-199b-2-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028425 | mmu-miR-7228-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028271 | mml-miR-7168-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026223 | ccr-miR-142-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027415 | hsa-miR-6757-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025627 | gga-miR-6560-5p | 2 | _...... | 7 | 85 |
| MIMAT0025614 | gga-miR-6553-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024228 | ggo-miR-505 | 8 | _...... | 3 | 85 |
| MIMAT0023980 | cgr-miR-505-3p | 8 | _...... | 3 | 85 |
| MIMAT0023771 | cgr-miR-142-3p | 3 | ......_ | 8 | 85 |
| MIMAT0023403 | hco-miR-5924a-5p | 6 | _...... | 1 | 85 |
| MIMAT0022571 | ola-miR-200a | 6 | ......_ | 1 | 85 |
| MIMAT0020202 | dme-miR-4973-3p | 8 | _...... | 3 | 85 |
| MIMAT0020033 | sko-miR-4826-3p | 8 | _...... | 3 | 85 |
| MIMAT0018229 | gma-miR4341 | 2 | _...... | 7 | 85 |
| MIMAT0018080 | hsa-miR-3659 | 3 | ......_ | 8 | 85 |
| MIMAT0016937 | bta-miR-3602 | 1 | _...... | 6 | 85 |
| MIMAT0016737 | cin-miR-4139-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016713 | cin-miR-4121-3p | 1 | _...... | 6 | 85 |
| MIMAT0016670 | cin-miR-4092-5p | 2 | _...... | 7 | 85 |
| MIMAT0016611 | cin-miR-4061-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017883 | rno-miR-3587 | 6 | ......_ | 1 | 85 |
| MIMAT0016086 | ppy-miR-653 | 1 | _...... | 6 | 85 |
| MIMAT0016050 | ppy-miR-609 | 3 | ......_ | 8 | 85 |
| MIMAT0026999 | tgu-miR-142-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017389 | tgu-miR-338-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012947 | eca-miR-653 | 1 | _...... | 6 | 85 |
| MIMAT0012632 | bmo-miR-2752 | 8 | _...... | 3 | 85 |
| MIMAT0012501 | dsi-miR-975 | 8 | ......_ | 3 | 85 |
| MIMAT0009924 | cfa-miR-653 | 1 | _...... | 6 | 85 |
| MIMAT0009876 | cfa-miR-141 | 6 | ......_ | 1 | 85 |
| MIMAT0009624 | sko-miR-124-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019146 | bfl-miR-124-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009358 | bta-miR-653 | 1 | _...... | 6 | 85 |
| MIMAT0009102 | dya-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0009003 | dwi-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008930 | dvi-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008899 | dsi-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008770 | dse-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008757 | dpe-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008659 | dmo-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008563 | dgr-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008483 | der-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008424 | dan-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0019114 | tca-miR-124-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008303 | ptr-miR-653 | 1 | _...... | 6 | 85 |
| MIMAT0006494 | mml-miR-653-5p | 1 | _...... | 6 | 85 |
| MIMAT0007378 | gma-miR1519 | 3 | ......_ | 8 | 85 |
| MIMAT0007377 | gma-miR1518 | 2 | _...... | 7 | 85 |
| MIMAT0005233 | smo-miR1082b | 1 | _...... | 6 | 85 |
| MIMAT0020904 | dme-miR-1007-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005491 | dme-miR-975-5p | 8 | ......_ | 3 | 85 |
| MIMAT0004943 | mmu-miR-653-5p | 1 | _...... | 6 | 85 |
| MIMAT0012109 | sme-miR-87a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0003791 | bta-miR-142-3p | 1 | ......_ | 6 | 85 |
| MIMAT0003380 | rno-miR-505-3p | 8 | _...... | 3 | 85 |
| MIMAT0003328 | hsa-miR-653-5p | 1 | _...... | 6 | 85 |
| MIMAT0026573 | mml-miR-21-3p | 6 | _...... | 1 | 85 |
| MIMAT0002201 | ppa-miR-141 | 6 | ......_ | 1 | 85 |
| MIMAT0002200 | ppy-miR-141 | 6 | ......_ | 1 | 85 |
| MIMAT0002198 | ggo-miR-141 | 6 | ......_ | 1 | 85 |
| MIMAT0002196 | mml-miR-141-3p | 6 | ......_ | 1 | 85 |
| MIMAT0002180 | kshv-miR-K12-10b | 3 | _...... | 8 | 85 |
| MIMAT0001251 | dps-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0000360 | dme-miR-287-3p | 2 | _...... | 7 | 85 |
| MIMAT0004494 | hsa-miR-21-3p | 6 | _...... | 1 | 85 |
