| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccacggcg | 8 | ||
| MIMAT0013964 | bhv1-miR-B3 | 1 | ........ | 8 | 100 |
| MIMAT0025633 | gga-miR-6564-5p | 7 | _....... | 1 | 87 |
| MIMAT0024862 | mmu-miR-6241 | 1 | _....... | 7 | 87 |
| MIMAT0023434 | hco-miR-5939 | 8 | ......._ | 2 | 87 |
| MIMAT0019630 | pma-miR-4597 | 8 | _....... | 2 | 87 |
| MIMAT0007124 | oan-miR-1382 | 7 | ......._ | 1 | 87 |
| MIMAT0028449 | mmu-miR-7240-3p | 8 | .a...... | 1 | 87 |
| MIMAT0021955 | aca-miR-425-3p | 1 | ......g. | 8 | 87 |
| MIMAT0036694 | oha-miR-132-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035905 | chi-miR-105b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0034797 | efu-miR-9209d | 8 | _......_ | 3 | 75 |
| MIMAT0033941 | atr-miR396d | 3 | ......__ | 8 | 75 |
| MIMAT0033866 | atr-miR8552c | 7 | _......_ | 2 | 75 |
| MIMAT0032878 | ppc-miR-8222-5p | 1 | __...... | 6 | 75 |
| MIMAT0032334 | ssa-miR-132-4-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032333 | ssa-miR-132-3-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032331 | ssa-miR-132-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031528 | ppe-miR7122a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030832 | prd-miR-7964b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030828 | prd-miR-7964a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0029405 | ipu-miR-132a | 7 | ......__ | 2 | 75 |
| MIMAT0028880 | mdo-miR-7391-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028356 | mml-miR-7197-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028186 | dev-miR-D13-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028168 | hcmv-miR-US29-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026162 | cme-miR396e | 3 | ......__ | 8 | 75 |
| MIMAT0025995 | mdm-miR396g | 3 | ......__ | 8 | 75 |
| MIMAT0025994 | mdm-miR396f | 3 | ......__ | 8 | 75 |
| MIMAT0028084 | mmu-miR-7089-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027912 | mmu-miR-7004-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025332 | pde-miR396 | 3 | ......__ | 8 | 75 |
| MIMAT0023758 | cgr-miR-132-5p | 7 | ......__ | 2 | 75 |
| MIMAT0021745 | aca-miR-132-5p | 7 | ......__ | 2 | 75 |
| MIMAT0021469 | asu-miR-72-3p | 7 | _......_ | 2 | 75 |
| MIMAT0020131 | cel-miR-4923b | 2 | __...... | 7 | 75 |
| MIMAT0020430 | tcc-miR396d | 3 | ......__ | 8 | 75 |
| MIMAT0019458 | pma-miR-132-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018964 | hsa-miR-4445-3p | 1 | _......_ | 6 | 75 |
| MIMAT0018154 | pab-miR396c | 3 | ......__ | 8 | 75 |
| MIMAT0018153 | pab-miR396b | 3 | ......__ | 8 | 75 |
| MIMAT0017962 | ssc-miR-4332 | 1 | _......_ | 6 | 75 |
| MIMAT0015054 | hsa-miR-3177-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014795 | api-miR-3053 | 1 | ......__ | 6 | 75 |
| MIMAT0014769 | api-miR-3033 | 2 | ......__ | 7 | 75 |
| MIMAT0014705 | hsv2-miR-H23-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013694 | bmo-miR-2794 | 1 | __...... | 6 | 75 |
| MIMAT0012243 | dps-miR-92c-5p | 8 | _......_ | 3 | 75 |
| MIMAT0010060 | osa-miR2098-5p | 8 | ......__ | 3 | 75 |
| MIMAT0032060 | dvi-miR-310-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026816 | mml-miR-132-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017336 | gma-miR171b-5p | 1 | __...... | 6 | 75 |
| MIMAT0007231 | oan-miR-146a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0005227 | smo-miR396 | 3 | ......__ | 8 | 75 |
| MIMAT0004408 | rrv-miR-rR1-2 | 3 | __...... | 8 | 75 |
| MIMAT0026693 | mdo-miR-132-5p | 7 | ......__ | 2 | 75 |
| MIMAT0002037 | ptc-miR396g-5p | 3 | ......__ | 8 | 75 |
| MIMAT0002036 | ptc-miR396f | 3 | ......__ | 8 | 75 |
| MIMAT0003403 | dre-miR-132-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017123 | rno-miR-132-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004594 | hsa-miR-132-5p | 7 | ......__ | 2 | 75 |
| MIMAT0020819 | dme-miR-92b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016984 | mmu-miR-132-5p | 8 | ......__ | 3 | 75 |
| MIMAT0020312 | cel-miR-53-3p | 1 | _......_ | 6 | 75 |
