| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccggaac | 8 | ||
| MIMAT0034817 | efu-miR-9223f | 7 | ......._ | 1 | 87 |
| MIMAT0030490 | prd-miR-7873a-5p | 8 | _....... | 2 | 87 |
| MIMAT0022379 | mmu-miR-5625-5p | 1 | ......._ | 7 | 87 |
| MIMAT0012332 | dps-miR-2522b-5p | 7 | ......._ | 1 | 87 |
| MIMAT0004412 | rrv-miR-rR1-5 | 1 | _....... | 7 | 87 |
| MIMAT0033659 | sma-miR-8470-5p | 1 | .g...... | 8 | 87 |
| MIMAT0024801 | hvu-miR6178 | 1 | .a...... | 8 | 87 |
| MIMAT0007957 | ptr-miR-1203 | 1 | ......g. | 8 | 87 |
| MIMAT0005866 | hsa-miR-1203 | 1 | ......g. | 8 | 87 |
| MIMAT0037075 | ssc-miR-9856-3p | 7 | __...... | 2 | 75 |
| MIMAT0035608 | dvi-miR-995-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035104 | efu-miR-9340 | 2 | _......_ | 7 | 75 |
| MIMAT0031711 | bbe-miR-4904-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028407 | mmu-miR-7219-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028292 | mml-miR-7176-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028265 | mml-miR-1180-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027972 | mmu-miR-7034-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025341 | pde-miR949b | 8 | ......__ | 3 | 75 |
| MIMAT0024214 | ggo-miR-1180 | 7 | _......_ | 2 | 75 |
| MIMAT0023453 | hco-miR-5951 | 7 | __...... | 2 | 75 |
| MIMAT0023282 | osa-miR5810 | 2 | __...... | 7 | 75 |
| MIMAT0021318 | mtr-miR5279 | 1 | __...... | 6 | 75 |
| MIMAT0020499 | bfl-miR-4904-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019738 | hsa-miR-4664-3p | 7 | _......_ | 2 | 75 |
| MIMAT0019574 | pma-miR-4544-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019032 | hsa-miR-4497 | 7 | ......__ | 2 | 75 |
| MIMAT0018256 | gma-miR4361 | 1 | _......_ | 6 | 75 |
| MIMAT0018893 | tca-miR-3895-3p | 1 | __...... | 6 | 75 |
| MIMAT0018867 | tca-miR-3884-3p | 2 | ......__ | 7 | 75 |
| MIMAT0018567 | ame-miR-3788 | 6 | __...... | 1 | 75 |
| MIMAT0018115 | hsa-miR-3687 | 1 | ......__ | 6 | 75 |
| MIMAT0016528 | cin-miR-4018a-5p | 1 | __...... | 6 | 75 |
| MIMAT0016450 | cin-miR-4001c-5p | 1 | __...... | 6 | 75 |
| MIMAT0016145 | ppy-miR-1180 | 7 | _......_ | 2 | 75 |
| MIMAT0017749 | esi-miR3466-5p | 6 | _......_ | 1 | 75 |
| MIMAT0013020 | eca-miR-1180 | 7 | _......_ | 2 | 75 |
| MIMAT0012868 | hvt-miR-H15-5p | 2 | __...... | 7 | 75 |
| MIMAT0012271 | dps-miR-995-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011808 | bta-miR-2299-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007388 | gma-miR1526 | 1 | _......_ | 6 | 75 |
| MIMAT0005961 | osa-miR1427 | 3 | __...... | 8 | 75 |
| MIMAT0005825 | hsa-miR-1180-3p | 7 | _......_ | 2 | 75 |
| MIMAT0005395 | cre-miR1151b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005393 | cre-miR1151a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017313 | rno-miR-673-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005009 | pta-miR949 | 8 | ......__ | 3 | 75 |
| MIMAT0004832 | ppt-miR1220b | 6 | _......_ | 1 | 75 |
| MIMAT0004831 | ppt-miR1220a | 6 | _......_ | 1 | 75 |
| MIMAT0004824 | mmu-miR-673-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019084 | rlcv-miR-rL1-1-3p | 7 | ......__ | 2 | 75 |
