| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgccggc | 7 | ||
| MIMAT0030817 | prd-miR-7950b-3p | 7 | ....... | 1 | 100 |
| MIMAT0030817 | prd-miR-7950b-3p | 1 | _...... | 6 | 85 |
| MIMAT0030771 | prd-miR-7950a-3p | 7 | ....... | 1 | 100 |
| MIMAT0030771 | prd-miR-7950a-3p | 1 | _...... | 6 | 85 |
| MIMAT0030713 | prd-miR-7950c-3p | 7 | ....... | 1 | 100 |
| MIMAT0030713 | prd-miR-7950c-3p | 1 | _...... | 6 | 85 |
| MIMAT0028166 | hcmv-miR-US22-3p | 2 | ....... | 8 | 100 |
| MIMAT0028166 | hcmv-miR-US22-3p | 8 | _...... | 3 | 85 |
| MIMAT0020141 | cel-miR-4935 | 7 | ....... | 1 | 100 |
| MIMAT0020141 | cel-miR-4935 | 1 | _...... | 6 | 85 |
| MIMAT0013963 | bhv1-miR-B2 | 7 | ....... | 1 | 100 |
| MIMAT0013963 | bhv1-miR-B2 | 1 | _...... | 6 | 85 |
| MIMAT0011213 | mmu-miR-2137 | 7 | ....... | 1 | 100 |
| MIMAT0011213 | mmu-miR-2137 | 1 | _...... | 6 | 85 |
| MIMAT0034727 | eca-miR-9151 | 7 | _...... | 2 | 85 |
| MIMAT0034727 | eca-miR-9151 | 2 | _...... | 7 | 85 |
| MIMAT0033282 | ppc-miR-8360-5p | 6 | ......_ | 1 | 85 |
| MIMAT0033101 | ppc-miR-8294-5p | 6 | _...... | 1 | 85 |
| MIMAT0033101 | ppc-miR-8294-5p | 1 | _...... | 6 | 85 |
| MIMAT0031379 | osa-miR531c | 3 | ......_ | 8 | 85 |
| MIMAT0030483 | prd-miR-50-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022224 | mtr-miR5560-3p | 7 | _...... | 2 | 85 |
| MIMAT0022224 | mtr-miR5560-3p | 2 | _...... | 7 | 85 |
| MIMAT0032126 | gma-miR169n-3p | 7 | _...... | 2 | 85 |
| MIMAT0032126 | gma-miR169n-3p | 2 | _...... | 7 | 85 |
| MIMAT0016595 | cin-miR-4053-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015680 | nvi-miR-2796 | 8 | _...... | 3 | 85 |
| MIMAT0015680 | nvi-miR-2796 | 3 | _...... | 8 | 85 |
| MIMAT0017562 | aly-miR397a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015386 | bmo-miR-2808d | 6 | ......_ | 1 | 85 |
| MIMAT0015079 | hsa-miR-3195 | 3 | ......_ | 8 | 85 |
| MIMAT0014707 | hsv2-miR-H24 | 8 | ......_ | 3 | 85 |
| MIMAT0007763 | osa-miR531b | 3 | ......_ | 8 | 85 |
| MIMAT0002887 | osa-miR531a | 3 | ......_ | 8 | 85 |
| MIMAT0031980 | dre-miR-181c-3p | 3 | ......_ | 8 | 85 |
