| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggactgc | 8 | ||
| MIMAT0003922 | mdv1-miR-M2-3p | 1 | ........ | 8 | 100 |
| MIMAT0036932 | oha-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0036608 | tch-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0036242 | chi-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0033982 | gra-miR3476 | 2 | ......._ | 8 | 87 |
| MIMAT0032644 | ssa-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0028274 | mml-miR-7170-5p | 2 | _....... | 8 | 87 |
| MIMAT0025066 | rno-miR-6327 | 1 | ......._ | 7 | 87 |
| MIMAT0024222 | ggo-miR-455 | 7 | _....... | 1 | 87 |
| MIMAT0023965 | cgr-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0022608 | ola-miR-455-3p | 8 | _....... | 2 | 87 |
| MIMAT0021965 | aca-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0015900 | ppy-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0014610 | tgu-miR-455-3p | 8 | _....... | 2 | 87 |
| MIMAT0013960 | ssc-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0008157 | ptr-miR-455 | 7 | _....... | 1 | 87 |
| MIMAT0008006 | ptr-miR-1288 | 2 | _....... | 8 | 87 |
| MIMAT0006340 | mml-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0005942 | hsa-miR-1288-3p | 2 | _....... | 8 | 87 |
| MIMAT0017308 | rno-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0003836 | bta-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0003742 | mmu-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0006788 | gga-miR-455-3p | 8 | _....... | 2 | 87 |
| MIMAT0004784 | hsa-miR-455-3p | 7 | _....... | 1 | 87 |
| MIMAT0034836 | efu-miR-9231 | 8 | .c...... | 1 | 87 |
| MIMAT0037167 | ata-miR169i-3p | 7 | __...... | 2 | 75 |
| MIMAT0036713 | oha-miR-1388-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036398 | gma-miR319q | 2 | _......_ | 7 | 75 |
| MIMAT0036377 | gma-miR319o | 2 | _......_ | 7 | 75 |
| MIMAT0035958 | chi-miR-1388-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035839 | bra-miR319-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035775 | tae-miR9664-3p | 8 | __...... | 3 | 75 |
| MIMAT0035477 | sly-miR9479-5p | 8 | _......_ | 3 | 75 |
| MIMAT0035432 | sly-miR319c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035430 | sly-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0035125 | efu-miR-9350 | 7 | _......_ | 2 | 75 |
| MIMAT0035085 | efu-miR-455 | 8 | __...... | 3 | 75 |
| MIMAT0035015 | efu-miR-1388 | 2 | _......_ | 7 | 75 |
| MIMAT0034675 | eca-miR-9124 | 2 | _......_ | 7 | 75 |
| MIMAT0034610 | eca-miR-9065 | 3 | _......_ | 8 | 75 |
| MIMAT0034496 | eca-miR-1388 | 2 | _......_ | 7 | 75 |
| MIMAT0034210 | gra-miR8772 | 3 | _......_ | 8 | 75 |
| MIMAT0034185 | gra-miR8756 | 2 | _......_ | 7 | 75 |
| MIMAT0034123 | gra-miR8727 | 1 | ......__ | 6 | 75 |
| MIMAT0033930 | atr-miR319c | 3 | _......_ | 8 | 75 |
| MIMAT0033928 | atr-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0033319 | str-miR-7880e-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033186 | ppc-miR-8245b-5p | 2 | __...... | 7 | 75 |
| MIMAT0032778 | ath-miR8179 | 2 | __...... | 7 | 75 |
| MIMAT0032335 | ssa-miR-1338-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031849 | cpa-miR8152 | 3 | _......_ | 8 | 75 |
| MIMAT0031364 | stu-miR169c-3p | 6 | __...... | 1 | 75 |
| MIMAT0031362 | stu-miR169b-3p | 6 | __...... | 1 | 75 |
| MIMAT0031360 | stu-miR169a-3p | 6 | __...... | 1 | 75 |
| MIMAT0031278 | stu-miR319a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031276 | stu-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0030979 | hsa-miR-8052 | 3 | _......_ | 8 | 75 |
| MIMAT0030952 | stu-miR319-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030457 | prd-lin-4-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030445 | bta-miR-7863 | 3 | _......_ | 8 | 75 |
| MIMAT0029983 | mtr-miR319d-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029981 | mtr-miR319c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029841 | mmu-miR-7667-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029259 | mes-miR319g | 3 | _......_ | 8 | 75 |
| MIMAT0029258 | mes-miR319f | 3 | _......_ | 8 | 75 |
| MIMAT0029257 | mes-miR319e | 3 | _......_ | 8 | 75 |
| MIMAT0029256 | mes-miR319d | 3 | _......_ | 8 | 75 |
| MIMAT0029255 | mes-miR319c | 3 | _......_ | 8 | 75 |
| MIMAT0029254 | mes-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0029253 | mes-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0028428 | mmu-miR-7230-5p | 2 | __...... | 7 | 75 |
| MIMAT0028397 | mmu-miR-7214-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028181 | dev-miR-D9-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028152 | ssc-miR-7138-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026132 | cme-miR319d | 3 | _......_ | 8 | 75 |
| MIMAT0026130 | cme-miR319c | 3 | _......_ | 8 | 75 |
| MIMAT0026129 | cme-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0026128 | cme-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0025968 | mdm-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0025967 | mdm-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0025855 | hsa-miR-6723-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025286 | hbr-miR319 | 3 | _......_ | 8 | 75 |
| MIMAT0027300 | ppe-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0024700 | nta-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0024699 | nta-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0027130 | lus-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0027123 | lus-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0024522 | cca-miR319 | 3 | _......_ | 8 | 75 |
| MIMAT0024384 | ppy-miR-4515 | 2 | _......_ | 7 | 75 |
| MIMAT0023557 | tca-miR-6008-5p | 1 | __...... | 6 | 75 |
| MIMAT0023510 | hhv6b-miR-Ro6-1-5p | 8 | __...... | 3 | 75 |
| MIMAT0023271 | osa-miR5802 | 3 | _......_ | 8 | 75 |
| MIMAT0022761 | vun-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0022567 | ola-miR-1388-5p | 2 | _......_ | 7 | 75 |
| MIMAT0023048 | tur-miR-745-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022679 | amg-miR319 | 3 | _......_ | 8 | 75 |
| MIMAT0022675 | aau-miR319 | 3 | _......_ | 8 | 75 |
| MIMAT0021760 | aca-miR-1388-5p | 2 | _......_ | 7 | 75 |
| MIMAT0021667 | gma-miR319m | 3 | _......_ | 8 | 75 |
| MIMAT0021666 | gma-miR319l | 3 | _......_ | 8 | 75 |
| MIMAT0021665 | gma-miR319k | 3 | _......_ | 8 | 75 |
| MIMAT0021664 | gma-miR319j | 3 | _......_ | 8 | 75 |
| MIMAT0021663 | gma-miR319i | 3 | _......_ | 8 | 75 |
| MIMAT0021662 | gma-miR319h | 3 | _......_ | 8 | 75 |
| MIMAT0021661 | gma-miR319g | 3 | _......_ | 8 | 75 |
| MIMAT0020761 | bdi-miR319b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027071 | bdi-miR169h-3p | 7 | __...... | 2 | 75 |
| MIMAT0027065 | bdi-miR169e-3p | 7 | __...... | 2 | 75 |
| MIMAT0021024 | hsa-miR-5002-3p | 2 | __...... | 7 | 75 |
| MIMAT0020994 | gma-miR319f | 3 | _......_ | 8 | 75 |
| MIMAT0020993 | gma-miR319e | 3 | _......_ | 8 | 75 |
| MIMAT0020992 | gma-miR319d | 2 | _......_ | 7 | 75 |
| MIMAT0019869 | hsa-miR-4740-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019059 | hsa-miR-1269b | 3 | _......_ | 8 | 75 |
| MIMAT0019052 | hsa-miR-4515 | 2 | _......_ | 7 | 75 |
| MIMAT0018248 | gma-miR4356 | 3 | _......_ | 8 | 75 |
| MIMAT0018211 | tae-miR319 | 3 | _......_ | 8 | 75 |
| MIMAT0016906 | hsa-miR-4274 | 8 | __...... | 3 | 75 |
| MIMAT0016239 | ppy-miR-1910 | 7 | _......_ | 2 | 75 |
| MIMAT0016193 | ppy-miR-1269 | 3 | _......_ | 8 | 75 |
| MIMAT0016063 | ppy-miR-622 | 7 | _......_ | 2 | 75 |
| MIMAT0017664 | aly-miR319d-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017512 | aly-miR169n-3p | 7 | __...... | 2 | 75 |
| MIMAT0017510 | aly-miR169m-3p | 7 | __...... | 2 | 75 |
| MIMAT0017508 | aly-miR169l-3p | 7 | __...... | 2 | 75 |
| MIMAT0017506 | aly-miR169k-3p | 7 | __...... | 2 | 75 |
| MIMAT0017504 | aly-miR169j-3p | 7 | __...... | 2 | 75 |
| MIMAT0017502 | aly-miR169i-3p | 7 | __...... | 2 | 75 |
| MIMAT0017500 | aly-miR169h-3p | 7 | __...... | 2 | 75 |
| MIMAT0017461 | aly-miR166b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017434 | aly-miR319c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017432 | aly-miR319b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017430 | aly-miR319a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015084 | hsa-miR-3199 | 3 | _......_ | 8 | 75 |
| MIMAT0015044 | hsa-miR-3169 | 3 | _......_ | 8 | 75 |
| MIMAT0027019 | tgu-miR-1388-5p | 2 | _......_ | 7 | 75 |
| MIMAT0014468 | tgu-miR-2965 | 3 | _......_ | 8 | 75 |
| MIMAT0014183 | rco-miR319d | 3 | _......_ | 8 | 75 |
| MIMAT0014182 | rco-miR319c | 3 | _......_ | 8 | 75 |
| MIMAT0014181 | rco-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0014180 | rco-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0014077 | ctr-miR319 | 3 | _......_ | 8 | 75 |
| MIMAT0019194 | rlcv-miR-rL1-29-5p | 7 | _......_ | 2 | 75 |
| MIMAT0026942 | mdo-miR-455-3p | 8 | __...... | 3 | 75 |
| MIMAT0013590 | bta-miR-1388-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012573 | aqc-miR319 | 3 | _......_ | 8 | 75 |
| MIMAT0011346 | sbi-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0011292 | dre-miR-1388-5p | 2 | _......_ | 7 | 75 |
| MIMAT0011176 | pvu-miR319c | 3 | _......_ | 8 | 75 |
| MIMAT0010037 | mtr-miR2087-3p | 8 | __...... | 3 | 75 |
| MIMAT0019121 | tca-miR-219-3p | 2 | _......_ | 7 | 75 |
| MIMAT0019111 | tca-miR-92a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007884 | hsa-miR-1910-5p | 7 | _......_ | 2 | 75 |
| MIMAT0006471 | mml-miR-625 | 1 | _......_ | 6 | 75 |
| MIMAT0007427 | gga-miR-1567 | 1 | __...... | 6 | 75 |
| MIMAT0007385 | gma-miR1524 | 8 | ......__ | 3 | 75 |
| MIMAT0007168 | oan-miR-1388-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007024 | oan-miR-1362-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005706 | vvi-miR319g | 3 | _......_ | 8 | 75 |
| MIMAT0005705 | vvi-miR319f | 3 | _......_ | 8 | 75 |
| MIMAT0005704 | vvi-miR319c | 3 | _......_ | 8 | 75 |
| MIMAT0005703 | vvi-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0005923 | hsa-miR-1269a | 3 | _......_ | 8 | 75 |
| MIMAT0004997 | pta-miR319 | 3 | _......_ | 8 | 75 |
| MIMAT0004396 | cre-miR913-3p | 2 | ......__ | 7 | 75 |
| MIMAT0011082 | mtr-miR319b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004242 | ath-miR826a | 7 | ......__ | 2 | 75 |
| MIMAT0003459 | mmu-miR-682 | 8 | __...... | 3 | 75 |
| MIMAT0003455 | mmu-miR-679-5p | 1 | _......_ | 6 | 75 |
| MIMAT0002138 | ssc-miR-301 | 6 | _......_ | 1 | 75 |
| MIMAT0002009 | ptc-miR319h | 3 | _......_ | 8 | 75 |
| MIMAT0002008 | ptc-miR319g | 3 | _......_ | 8 | 75 |
| MIMAT0002007 | ptc-miR319f | 3 | _......_ | 8 | 75 |
| MIMAT0002006 | ptc-miR319e | 3 | _......_ | 8 | 75 |
| MIMAT0002005 | ptc-miR319d | 3 | _......_ | 8 | 75 |
| MIMAT0002004 | ptc-miR319c | 3 | _......_ | 8 | 75 |
| MIMAT0002003 | ptc-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0002002 | ptc-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0022900 | ptc-miR169u-3p | 7 | __...... | 2 | 75 |
| MIMAT0031993 | dre-miR-455-3p | 8 | __...... | 3 | 75 |
| MIMAT0015197 | zma-miR169j-3p | 7 | __...... | 2 | 75 |
| MIMAT0015196 | zma-miR169k-3p | 7 | __...... | 2 | 75 |
| MIMAT0015195 | zma-miR169i-3p | 7 | __...... | 2 | 75 |
| MIMAT0001718 | zma-miR319d-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001717 | zma-miR319b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001716 | zma-miR319c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001715 | zma-miR319a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001691 | gma-miR319c | 3 | _......_ | 8 | 75 |
| MIMAT0001685 | gma-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0001684 | gma-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0001653 | mtr-miR319a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001469 | sbi-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0001029 | osa-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0001028 | osa-miR319a-3p.2-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001016 | ath-miR319c | 3 | _......_ | 8 | 75 |
| MIMAT0000512 | ath-miR319b | 3 | _......_ | 8 | 75 |
| MIMAT0000511 | ath-miR319a | 3 | _......_ | 8 | 75 |
| MIMAT0031881 | ath-miR166b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031880 | ath-miR166a-5p | 1 | _......_ | 6 | 75 |
