| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgtcgag | 7 | ||
| MIMAT0036917 | oha-miR-375-5p | 2 | ....... | 8 | 100 |
| MIMAT0021950 | aca-miR-375-5p | 2 | ....... | 8 | 100 |
| MIMAT0015387 | bmo-miR-3208 | 1 | ....... | 7 | 100 |
| MIMAT0004473 | mdv2-miR-M27-3p | 2 | ....... | 8 | 100 |
| MIMAT0037230 | ata-miR398g-5p | 3 | _...... | 8 | 85 |
| MIMAT0033613 | sma-miR-8451-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032803 | cel-miR-8195-5p | 1 | _...... | 6 | 85 |
| MIMAT0032797 | cel-miR-8192-5p | 3 | _...... | 8 | 85 |
| MIMAT0032420 | ssa-miR-181a-3-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030620 | prd-miR-7904-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030596 | prd-miR-7966a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030238 | bdi-miR7749-5p | 3 | ......_ | 8 | 85 |
| MIMAT0024737 | nta-miR6148a | 3 | ......_ | 8 | 85 |
| MIMAT0023669 | ame-miR-6046 | 6 | ......_ | 1 | 85 |
| MIMAT0023263 | osa-miR5795 | 3 | _...... | 8 | 85 |
| MIMAT0021650 | gma-miR169j-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019677 | osa-miR3980b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019675 | osa-miR3980a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0018649 | tca-miR-3813-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018566 | ame-miR-3787 | 3 | _...... | 8 | 85 |
| MIMAT0017765 | esi-miR3461-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017646 | aly-miR858-3p | 2 | _...... | 7 | 85 |
| MIMAT0011554 | crm-miR-237-3p | 3 | _...... | 8 | 85 |
| MIMAT0011480 | cbr-miR-237-3p | 3 | _...... | 8 | 85 |
| MIMAT0007026 | oan-miR-1363-3p | 1 | _...... | 6 | 85 |
| MIMAT0017307 | rno-miR-434-5p | 8 | _...... | 3 | 85 |
| MIMAT0001421 | mmu-miR-434-5p | 7 | _...... | 2 | 85 |
| MIMAT0020333 | cel-miR-237-3p | 3 | _...... | 8 | 85 |
