| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgttgtc | 7 | ||
| MIMAT0033947 | atr-miR535 | 8 | ....... | 2 | 100 |
| MIMAT0032534 | ssa-miR-21a-3p | 8 | ....... | 2 | 100 |
| MIMAT0031824 | cpa-miR535 | 8 | ....... | 2 | 100 |
| MIMAT0031514 | ppe-miR535a | 8 | ....... | 2 | 100 |
| MIMAT0029301 | mes-miR535b | 8 | ....... | 2 | 100 |
| MIMAT0029300 | mes-miR535a | 8 | ....... | 2 | 100 |
| MIMAT0026024 | mdm-miR535a | 8 | ....... | 2 | 100 |
| MIMAT0022027 | aca-miR-5410-5p | 1 | ....... | 7 | 100 |
| MIMAT0020448 | tcc-miR535 | 8 | ....... | 2 | 100 |
| MIMAT0018159 | pab-miR535 | 8 | ....... | 2 | 100 |
| MIMAT0014205 | rco-miR535 | 8 | ....... | 2 | 100 |
| MIMAT0012594 | aqc-miR535 | 8 | ....... | 2 | 100 |
| MIMAT0007682 | gga-miR-1772-3p | 2 | ....... | 8 | 100 |
| MIMAT0007294 | mdv1-miR-M10-5p | 2 | ....... | 8 | 100 |
| MIMAT0005738 | vvi-miR535c | 8 | ....... | 2 | 100 |
| MIMAT0005736 | vvi-miR535b | 8 | ....... | 2 | 100 |
| MIMAT0005735 | vvi-miR535a | 8 | ....... | 2 | 100 |
| MIMAT0003915 | ppt-miR535d | 8 | ....... | 2 | 100 |
| MIMAT0003142 | osa-miR535-5p | 8 | ....... | 2 | 100 |
| MIMAT0003141 | ppt-miR535c | 8 | ....... | 2 | 100 |
| MIMAT0003140 | ppt-miR535b | 8 | ....... | 2 | 100 |
| MIMAT0003139 | ppt-miR535a | 8 | ....... | 2 | 100 |
| MIMAT0035598 | dvi-miR-981-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035327 | gsa-miR-9391-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035287 | gsa-miR-76a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0034611 | eca-miR-9066 | 8 | _...... | 3 | 85 |
| MIMAT0033415 | str-miR-76-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033288 | ppc-miR-8361-5p | 8 | _...... | 3 | 85 |
| MIMAT0033088 | ppc-miR-76-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032756 | ssa-miR-8162-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032537 | ssa-miR-21b-3p | 7 | _...... | 2 | 85 |
| MIMAT0032535 | ssa-miR-21a-2-3p | 7 | _...... | 2 | 85 |
| MIMAT0031683 | bbe-miR-4863-5p | 7 | _...... | 2 | 85 |
| MIMAT0031567 | ppe-miR858 | 3 | ......_ | 8 | 85 |
| MIMAT0030819 | prd-miR-76-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029997 | mtr-miR7698-3p | 8 | _...... | 3 | 85 |
| MIMAT0032221 | lva-miR-981-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032174 | pmi-miR-981-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029777 | cbn-miR-76 | 3 | ......_ | 8 | 85 |
| MIMAT0028354 | mml-miR-323b-5p | 3 | _...... | 8 | 85 |
| MIMAT0028345 | mml-miR-549b-3p | 6 | _...... | 1 | 85 |
| MIMAT0026383 | bma-miR-5881b | 8 | _...... | 3 | 85 |
| MIMAT0026070 | mdm-miR858 | 3 | ......_ | 8 | 85 |
| MIMAT0027411 | hsa-miR-6755-3p | 2 | _...... | 7 | 85 |
| MIMAT0025425 | pol-miR-21-3p | 7 | _...... | 2 | 85 |
| MIMAT0024999 | hme-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0024929 | gma-miR6300 | 3 | ......_ | 8 | 85 |
| MIMAT0024433 | mse-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0023952 | cgr-miR-410-5p | 3 | _...... | 8 | 85 |
| MIMAT0023496 | hco-miR-76 | 3 | ......_ | 8 | 85 |
| MIMAT0023093 | tur-miR-5735-3p | 8 | _...... | 3 | 85 |
| MIMAT0022417 | ath-miR858b | 3 | ......_ | 8 | 85 |
| MIMAT0022118 | osa-miR5485 | 7 | _...... | 2 | 85 |
| MIMAT0021471 | asu-miR-76-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020095 | bfl-miR-4863-5p | 7 | _...... | 2 | 85 |
| MIMAT0020068 | spu-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0019275 | oar-miR-3958-5p | 3 | _...... | 8 | 85 |
| MIMAT0018367 | far-miR1134 | 7 | _...... | 2 | 85 |
| MIMAT0018319 | gma-miR4401a | 6 | ......_ | 1 | 85 |
| MIMAT0018598 | ame-miR-3730 | 6 | ......_ | 1 | 85 |
| MIMAT0017979 | ssc-miR-494 | 3 | _...... | 8 | 85 |
| MIMAT0016564 | cin-miR-4037-3p | 8 | _...... | 3 | 85 |
| MIMAT0016427 | cin-miR-4000c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015996 | ppy-miR-549 | 7 | _...... | 2 | 85 |
| MIMAT0015898 | ppy-miR-453 | 3 | _...... | 8 | 85 |
| MIMAT0017704 | aly-miR3436-3p | 8 | ......_ | 3 | 85 |
| MIMAT0001630 | hsa-miR-323b-5p | 3 | _...... | 8 | 85 |
| MIMAT0014736 | api-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0014386 | cqu-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0014267 | aae-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0017372 | rno-miR-496-5p | 3 | _...... | 8 | 85 |
| MIMAT0012675 | dpu-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0012486 | dsi-miR-981-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012220 | dps-miR-981-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012073 | bta-miR-2481 | 3 | ......_ | 8 | 85 |
| MIMAT0011804 | bta-miR-2296 | 8 | _...... | 3 | 85 |
| MIMAT0011525 | crm-miR-76 | 3 | ......_ | 8 | 85 |
| MIMAT0011466 | cbr-miR-76 | 3 | ......_ | 8 | 85 |
| MIMAT0011397 | sme-miR-76-3p | 3 | ......_ | 8 | 85 |
| MIMAT0010121 | ame-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0010098 | tca-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0009601 | lgi-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0009548 | cte-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0009325 | bta-miR-453 | 3 | _...... | 8 | 85 |
| MIMAT0008229 | ptr-miR-549 | 7 | _...... | 2 | 85 |
| MIMAT0008155 | ptr-miR-453 | 3 | _...... | 8 | 85 |
| MIMAT0007857 | aga-miR-981 | 3 | ......_ | 8 | 85 |
| MIMAT0026906 | mml-miR-656-5p | 3 | _...... | 8 | 85 |
| MIMAT0026885 | mml-miR-494-5p | 3 | _...... | 8 | 85 |
| MIMAT0006337 | mml-miR-453 | 3 | _...... | 8 | 85 |
| MIMAT0026869 | mml-miR-410-5p | 3 | _...... | 8 | 85 |
| MIMAT0005971 | osa-miR444c.1 | 2 | _...... | 7 | 85 |
| MIMAT0005969 | osa-miR444b.1 | 2 | _...... | 7 | 85 |
| MIMAT0007102 | oan-miR-1422n-3p | 8 | _...... | 3 | 85 |
| MIMAT0005389 | cre-miR1149.2 | 2 | _...... | 7 | 85 |
| MIMAT0017303 | rno-miR-410-5p | 3 | _...... | 8 | 85 |
| MIMAT0005497 | dme-miR-981-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003333 | hsa-miR-549a | 7 | _...... | 2 | 85 |
| MIMAT0017218 | rno-miR-494-5p | 3 | _...... | 8 | 85 |
| MIMAT0017215 | mmu-miR-494-5p | 3 | _...... | 8 | 85 |
| MIMAT0026607 | hsa-miR-494-5p | 3 | _...... | 8 | 85 |
| MIMAT0026558 | hsa-miR-410-5p | 3 | _...... | 8 | 85 |
| MIMAT0017172 | mmu-miR-410-5p | 3 | _...... | 8 | 85 |
| MIMAT0000048 | cel-miR-76-3p | 3 | ......_ | 8 | 85 |
