| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctcaagtt | 8 | ||
| MIMAT0016947 | rlcv-miR-rL1-24-5p | 1 | ........ | 8 | 100 |
| MIMAT0035589 | dvi-miR-969-3p | 7 | _....... | 1 | 87 |
| MIMAT0035369 | nve-miR-9414-5p | 7 | _....... | 1 | 87 |
| MIMAT0034419 | cfa-miR-508a | 8 | ......._ | 2 | 87 |
| MIMAT0033535 | sma-miR-8415-3p | 7 | _....... | 1 | 87 |
| MIMAT0030211 | bdi-miR7737-3p | 7 | ......._ | 1 | 87 |
| MIMAT0029988 | mtr-miR7696b-5p | 1 | _....... | 7 | 87 |
| MIMAT0029986 | mtr-miR7696a-5p | 1 | _....... | 7 | 87 |
| MIMAT0028584 | mdo-miR-7298-5p | 1 | _....... | 7 | 87 |
| MIMAT0022411 | ath-miR5647 | 1 | _....... | 7 | 87 |
| MIMAT0018992 | hsa-miR-4465 | 1 | ......._ | 7 | 87 |
| MIMAT0018794 | tca-miR-375-5p | 7 | ......._ | 1 | 87 |
| MIMAT0015575 | bmo-miR-3382-5p | 1 | _....... | 7 | 87 |
| MIMAT0012480 | dsi-miR-969-3p | 7 | _....... | 1 | 87 |
| MIMAT0012276 | dps-miR-969-3p | 7 | _....... | 1 | 87 |
| MIMAT0012154 | sme-miR-2163-5p | 8 | _....... | 2 | 87 |
| MIMAT0009707 | cte-miR-1996a | 1 | ......._ | 7 | 87 |
| MIMAT0005196 | ppt-miR1069-5p | 2 | ......._ | 8 | 87 |
| MIMAT0020866 | dme-miR-969-3p | 7 | _....... | 1 | 87 |
| MIMAT0004867 | mmu-miR-327 | 7 | ......._ | 1 | 87 |
| MIMAT0003717 | ebv-miR-BART18-5p | 1 | _....... | 7 | 87 |
| MIMAT0017210 | mmu-miR-547-5p | 8 | ......._ | 2 | 87 |
| MIMAT0035110 | efu-miR-9342 | 8 | ......a. | 1 | 87 |
| MIMAT0034511 | eca-miR-8974 | 1 | ......a. | 8 | 87 |
| MIMAT0023181 | gma-miR5776 | 8 | .c...... | 1 | 87 |
| MIMAT0022360 | mmu-miR-5616-3p | 8 | .a...... | 1 | 87 |
| MIMAT0031078 | mml-miR-9-3-3p | 1 | ......c. | 8 | 87 |
| MIMAT0037253 | ata-miR169h-3p | 2 | __...... | 7 | 75 |
| MIMAT0037207 | ata-miR169d-3p | 3 | __...... | 8 | 75 |
| MIMAT0036861 | oha-miR-26-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036602 | tch-miR-26a-2-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036550 | tch-miR-26b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036488 | tch-miR-26a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036103 | chi-miR-26b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036101 | chi-miR-26a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036096 | chi-miR-2284e | 8 | __...... | 3 | 75 |
| MIMAT0035853 | bra-miR396-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035076 | efu-miR-26b | 2 | _......_ | 7 | 75 |
| MIMAT0035006 | efu-miR-26c | 2 | _......_ | 7 | 75 |
| MIMAT0034939 | efu-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0034878 | efu-miR-544 | 2 | __...... | 7 | 75 |
| MIMAT0034828 | efu-miR-9226 | 1 | _......_ | 6 | 75 |
| MIMAT0033943 | atr-miR397a | 8 | ......__ | 3 | 75 |
| MIMAT0033337 | str-lin-4-3p | 2 | __...... | 7 | 75 |
| MIMAT0033218 | ppc-miR-8336-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032571 | ssa-miR-26d-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032569 | ssa-miR-26b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032563 | ssa-miR-26a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032385 | ssa-miR-152-5p | 1 | __...... | 6 | 75 |
| MIMAT0031368 | stu-miR169e-3p | 2 | __...... | 7 | 75 |
| MIMAT0031008 | hsa-miR-8081 | 6 | ......__ | 1 | 75 |
| MIMAT0030976 | stu-miR8050-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030783 | prd-miR-7918c-3p | 3 | __...... | 8 | 75 |
| MIMAT0030781 | prd-miR-7918d-3p | 3 | __...... | 8 | 75 |
| MIMAT0030677 | prd-miR-7918f-3p | 2 | __...... | 7 | 75 |
| MIMAT0030675 | prd-miR-7918e-3p | 3 | __...... | 8 | 75 |
| MIMAT0030609 | prd-miR-7918b-3p | 3 | __...... | 8 | 75 |
| MIMAT0030607 | prd-miR-7918a-3p | 2 | __...... | 7 | 75 |
| MIMAT0030401 | ptc-miR7819 | 7 | ......__ | 2 | 75 |
| MIMAT0030396 | ptc-miR6459b | 2 | ......__ | 7 | 75 |
| MIMAT0030361 | hhi-miR-26 | 2 | _......_ | 7 | 75 |
| MIMAT0030052 | oar-miR-26b | 2 | _......_ | 7 | 75 |
| MIMAT0030051 | oar-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0030002 | mtr-miR169l-3p | 3 | __...... | 8 | 75 |
| MIMAT0029486 | ipu-miR-26b | 2 | _......_ | 7 | 75 |
| MIMAT0029485 | ipu-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0029359 | lja-miR7534 | 8 | __...... | 3 | 75 |
| MIMAT0028994 | oan-miR-7422a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028402 | mmu-miR-7217-5p | 6 | __...... | 1 | 75 |
| MIMAT0026449 | sbi-miR6233-3p | 1 | __...... | 6 | 75 |
| MIMAT0026397 | sbi-miR6218-3p | 2 | __...... | 7 | 75 |
| MIMAT0026281 | ccr-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0025646 | gga-miR-6569-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025535 | bta-miR-378b | 6 | _......_ | 1 | 75 |
| MIMAT0025483 | hsa-miR-6513-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025216 | ptc-miR6475 | 7 | ......__ | 2 | 75 |
| MIMAT0025184 | ptc-miR6459a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025177 | mmu-miR-873b | 2 | __...... | 7 | 75 |
| MIMAT0025115 | mmu-miR-6371 | 2 | _......_ | 7 | 75 |
| MIMAT0027119 | mml-miR-514b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0024091 | ggo-miR-26b | 2 | _......_ | 7 | 75 |
| MIMAT0023872 | cgr-miR-26b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0023871 | cgr-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0023481 | hco-miR-5928e | 2 | _......_ | 7 | 75 |
| MIMAT0023286 | osa-miR5814 | 3 | _......_ | 8 | 75 |
| MIMAT0023219 | gma-miR396k-3p | 2 | ......__ | 7 | 75 |
| MIMAT0023171 | gma-miR5771 | 3 | ......__ | 8 | 75 |
| MIMAT0022575 | ola-miR-26 | 2 | _......_ | 7 | 75 |
| MIMAT0023064 | tur-miR-5733-5p | 7 | _......_ | 2 | 75 |
| MIMAT0022490 | hsa-miR-5697 | 1 | _......_ | 6 | 75 |
| MIMAT0022177 | osa-miR5541 | 1 | _......_ | 6 | 75 |
| MIMAT0021902 | aca-miR-26-5p | 2 | _......_ | 7 | 75 |
| MIMAT0021687 | sbi-miR5389 | 7 | ......__ | 2 | 75 |
| MIMAT0021258 | mtr-miR5258 | 1 | _......_ | 6 | 75 |
| MIMAT0021253 | mtr-miR5255 | 8 | _......_ | 3 | 75 |
| MIMAT0020044 | sko-miR-4830c | 7 | ......__ | 2 | 75 |
| MIMAT0020042 | sko-miR-4830b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0020041 | sko-miR-4830a | 8 | ......__ | 3 | 75 |
| MIMAT0019411 | pma-miR-26b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019408 | pma-miR-26a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0018237 | gma-miR4348a | 7 | __...... | 2 | 75 |
| MIMAT0016933 | bta-miR-2957 | 2 | __...... | 7 | 75 |
| MIMAT0016594 | cin-miR-4052-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016507 | cin-miR-4010-3p | 1 | __...... | 6 | 75 |
| MIMAT0016331 | ahy-miR3509-5p | 8 | _......_ | 3 | 75 |
| MIMAT0015985 | ppy-miR-526b | 8 | ......__ | 3 | 75 |
| MIMAT0015733 | ppy-miR-26b | 2 | _......_ | 7 | 75 |
| MIMAT0017560 | aly-miR396b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017498 | aly-miR169g-3p | 2 | __...... | 7 | 75 |
| MIMAT0017496 | aly-miR169f-3p | 2 | __...... | 7 | 75 |
| MIMAT0017494 | aly-miR169e-3p | 2 | __...... | 7 | 75 |
| MIMAT0017492 | aly-miR169d-3p | 2 | __...... | 7 | 75 |
| MIMAT0017488 | aly-miR169b-3p | 3 | __...... | 8 | 75 |
| MIMAT0017486 | aly-miR169a-3p | 3 | __...... | 8 | 75 |
| MIMAT0015087 | hsa-miR-514b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014516 | tgu-miR-26-5p | 2 | _......_ | 7 | 75 |
| MIMAT0014140 | ath-miR2936 | 6 | ......__ | 1 | 75 |
| MIMAT0014060 | osa-miR2929 | 1 | ......__ | 6 | 75 |
| MIMAT0015329 | zma-miR169r-3p | 3 | __...... | 8 | 75 |
| MIMAT0012975 | eca-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0012776 | mml-miR-526b | 8 | ......__ | 3 | 75 |
| MIMAT0012736 | mdo-miR-26-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013695 | bmo-miR-2795 | 1 | __...... | 6 | 75 |
| MIMAT0013570 | cte-miR-216c | 1 | __...... | 6 | 75 |
| MIMAT0012383 | dps-miR-2560-3p | 3 | _......_ | 8 | 75 |
| MIMAT0011901 | bta-miR-2363 | 8 | __...... | 3 | 75 |
| MIMAT0009712 | cte-miR-1996b | 2 | _......_ | 7 | 75 |
| MIMAT0032049 | dvi-miR-125-3p | 2 | __...... | 7 | 75 |
| MIMAT0032041 | dvi-miR-314-5p | 8 | __...... | 3 | 75 |
| MIMAT0019113 | tca-miR-100-3p | 1 | __...... | 6 | 75 |
| MIMAT0008211 | ptr-miR-526b | 8 | ......__ | 3 | 75 |
| MIMAT0008077 | ptr-miR-26b | 2 | _......_ | 7 | 75 |
| MIMAT0008016 | ptr-miR-1297 | 2 | _......_ | 7 | 75 |
| MIMAT0006678 | cfa-miR-26b | 2 | _......_ | 7 | 75 |
| MIMAT0006595 | cfa-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0006166 | mml-miR-26b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007633 | gga-miR-1731-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020937 | gma-miR1516a-5p | 1 | __...... | 6 | 75 |
| MIMAT0006991 | oan-miR-26-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005789 | hsa-miR-513c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005747 | age-miR-513c | 3 | ......__ | 8 | 75 |
| MIMAT0005886 | hsa-miR-1297 | 2 | _......_ | 7 | 75 |
| MIMAT0004462 | mdv2-miR-M20-3p | 1 | _......_ | 6 | 75 |
| MIMAT0020879 | dme-miR-982-3p | 8 | _......_ | 3 | 75 |
| MIMAT0026456 | mtr-miR396a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004241 | ath-miR825 | 3 | ......__ | 8 | 75 |
| MIMAT0003569 | xtr-miR-26 | 2 | _......_ | 7 | 75 |
| MIMAT0003531 | bta-miR-26b | 2 | _......_ | 7 | 75 |
| MIMAT0003516 | bta-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0003038 | tni-miR-26 | 2 | _......_ | 7 | 75 |
| MIMAT0003037 | fru-miR-26 | 2 | _......_ | 7 | 75 |
| MIMAT0002835 | hsa-miR-526b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0002350 | ppa-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0002349 | mml-miR-26a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0002348 | mne-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0002347 | lla-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0002346 | ppy-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0002345 | ggo-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0002344 | ptr-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0002135 | ssc-miR-26a | 2 | _......_ | 7 | 75 |
| MIMAT0022911 | ptc-miR396g-3p | 1 | ......__ | 6 | 75 |
| MIMAT0022910 | ptc-miR396e-3p | 1 | ......__ | 6 | 75 |
| MIMAT0001795 | dre-miR-26b | 2 | _......_ | 7 | 75 |
| MIMAT0001794 | dre-miR-26a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020923 | gma-miR396b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0015141 | zma-miR169b-3p | 3 | __...... | 8 | 75 |
| MIMAT0015140 | zma-miR169a-3p | 3 | __...... | 8 | 75 |
| MIMAT0001118 | gga-miR-26a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031909 | ath-miR396b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031898 | ath-miR169f-3p | 2 | __...... | 7 | 75 |
| MIMAT0031897 | ath-miR169b-3p | 3 | __...... | 8 | 75 |
| MIMAT0000797 | rno-miR-26b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0000796 | rno-miR-26a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0000561 | rno-miR-327 | 7 | ......__ | 2 | 75 |
| MIMAT0000534 | mmu-miR-26b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0000533 | mmu-miR-26a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020840 | dme-miR-314-5p | 8 | __...... | 3 | 75 |
| MIMAT0020831 | dme-miR-125-3p | 2 | __...... | 7 | 75 |
| MIMAT0031886 | ath-miR169a-3p | 3 | __...... | 8 | 75 |
| MIMAT0000083 | hsa-miR-26b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0000082 | hsa-miR-26a-5p | 2 | _......_ | 7 | 75 |
