| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttagtg | 7 | ||
| MIMAT0033580 | sma-miR-8438-5p | 7 | ....... | 1 | 100 |
| MIMAT0000999 | ebv-miR-BART1-5p | 2 | ....... | 8 | 100 |
| MIMAT0034356 | cfa-miR-8861 | 1 | _...... | 6 | 85 |
| MIMAT0034239 | gra-miR8786b | 3 | _...... | 8 | 85 |
| MIMAT0034238 | gra-miR8786a | 3 | _...... | 8 | 85 |
| MIMAT0034199 | gra-miR8765 | 1 | _...... | 6 | 85 |
| MIMAT0033900 | atr-miR8609 | 6 | ......_ | 1 | 85 |
| MIMAT0033886 | atr-miR8597 | 1 | _...... | 6 | 85 |
| MIMAT0030364 | hhi-miR-728 | 8 | ......_ | 3 | 85 |
| MIMAT0029523 | ipu-miR-728 | 8 | ......_ | 3 | 85 |
| MIMAT0028635 | mdo-miR-7317-3p | 3 | _...... | 8 | 85 |
| MIMAT0028468 | mdo-miR-7251-5p | 6 | ......_ | 1 | 85 |
| MIMAT0022464 | gma-miR4387e | 3 | _...... | 8 | 85 |
| MIMAT0021940 | aca-miR-34a-3p | 8 | _...... | 3 | 85 |
| MIMAT0019876 | hsa-miR-3591-5p | 2 | _...... | 7 | 85 |
| MIMAT0019753 | hsa-miR-4671-3p | 1 | _...... | 6 | 85 |
| MIMAT0017983 | hsa-miR-3606-5p | 1 | _...... | 6 | 85 |
| MIMAT0016819 | cin-miR-4200-5p | 6 | _...... | 1 | 85 |
| MIMAT0017625 | aly-miR840-5p | 7 | _...... | 2 | 85 |
| MIMAT0015389 | bmo-miR-3210 | 8 | ......_ | 3 | 85 |
| MIMAT0014797 | api-miR-3054 | 1 | _...... | 6 | 85 |
| MIMAT0012229 | dps-miR-957-5p | 1 | ......_ | 6 | 85 |
| MIMAT0007615 | gga-miR-1718 | 6 | ......_ | 1 | 85 |
| MIMAT0007407 | gga-miR-1552-5p | 1 | _...... | 6 | 85 |
| MIMAT0020851 | dme-miR-957-5p | 1 | ......_ | 6 | 85 |
| MIMAT0003757 | dre-miR-728 | 8 | ......_ | 3 | 85 |
| MIMAT0003434 | rlcv-miR-rL1-6-5p | 3 | _...... | 8 | 85 |
