| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttctggg | 8 | ||
| MIMAT0034819 | efu-miR-9223e | 1 | _....... | 7 | 87 |
| MIMAT0034369 | cfa-miR-8872 | 1 | _....... | 7 | 87 |
| MIMAT0031766 | hbv-miR-B7-5p | 1 | _....... | 7 | 87 |
| MIMAT0028743 | mdo-miR-7365-3p | 7 | ......._ | 1 | 87 |
| MIMAT0027714 | mmu-miR-6907-5p | 1 | _....... | 7 | 87 |
| MIMAT0036601 | tch-miR-326 | 1 | .c...... | 8 | 87 |
| MIMAT0036138 | chi-miR-326-3p | 1 | .c...... | 8 | 87 |
| MIMAT0027109 | mml-miR-1298-3p | 1 | .a...... | 8 | 87 |
| MIMAT0024215 | ggo-miR-326 | 1 | .c...... | 8 | 87 |
| MIMAT0023913 | cgr-miR-326 | 1 | .c...... | 8 | 87 |
| MIMAT0015830 | ppy-miR-326 | 1 | .c...... | 8 | 87 |
| MIMAT0012989 | eca-miR-326 | 1 | .c...... | 8 | 87 |
| MIMAT0009894 | cfa-miR-326 | 1 | .c...... | 8 | 87 |
| MIMAT0009286 | bta-miR-326 | 1 | .c...... | 8 | 87 |
| MIMAT0008099 | ptr-miR-326 | 1 | .c...... | 8 | 87 |
| MIMAT0007771 | osa-miR1851 | 1 | .g...... | 8 | 87 |
| MIMAT0014810 | mmu-miR-1298-3p | 1 | .a...... | 8 | 87 |
| MIMAT0026641 | hsa-miR-1298-3p | 1 | .a...... | 8 | 87 |
| MIMAT0002140 | ssc-miR-326 | 1 | .c...... | 8 | 87 |
| MIMAT0000756 | hsa-miR-326 | 1 | .c...... | 8 | 87 |
| MIMAT0000560 | rno-miR-326-3p | 1 | .c...... | 8 | 87 |
| MIMAT0000559 | mmu-miR-326-3p | 1 | .c...... | 8 | 87 |
| MIMAT0036615 | tch-miR-9770 | 1 | __...... | 6 | 75 |
| MIMAT0036143 | chi-miR-330-5p | 3 | __...... | 8 | 75 |
| MIMAT0035714 | mmu-miR-3154 | 6 | ......__ | 1 | 75 |
| MIMAT0035171 | efu-miR-9360 | 3 | __...... | 8 | 75 |
| MIMAT0034868 | efu-miR-9251 | 6 | _......_ | 1 | 75 |
| MIMAT0034694 | eca-miR-8908k | 8 | __...... | 3 | 75 |
| MIMAT0034689 | eca-miR-9138 | 1 | _......_ | 6 | 75 |
| MIMAT0034556 | eca-miR-9015 | 7 | __...... | 2 | 75 |
| MIMAT0034503 | eca-miR-8968 | 1 | __...... | 6 | 75 |
| MIMAT0034385 | cfa-miR-8883 | 1 | __...... | 6 | 75 |
| MIMAT0034343 | cfa-miR-8848 | 2 | ......__ | 7 | 75 |
| MIMAT0034342 | cfa-miR-8847 | 7 | __...... | 2 | 75 |
| MIMAT0033970 | esi-miR8631 | 2 | __...... | 7 | 75 |
| MIMAT0033352 | str-miR-5359-5p | 1 | __...... | 6 | 75 |
| MIMAT0033050 | ppc-miR-8275-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033011 | ppc-miR-8263-3p | 1 | __...... | 6 | 75 |
| MIMAT0031584 | bbe-miR-129b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031413 | mmu-miR-8108 | 1 | __...... | 6 | 75 |
| MIMAT0030714 | prd-miR-35a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030468 | prd-miR-5359-5p | 1 | __...... | 6 | 75 |
| MIMAT0030458 | prd-miR-7866-5p | 1 | __...... | 6 | 75 |
| MIMAT0029950 | bta-miR-2285z | 6 | _......_ | 1 | 75 |
| MIMAT0029890 | mmu-miR-7684-5p | 1 | __...... | 6 | 75 |
| MIMAT0029646 | crm-miR-254 | 8 | ......__ | 3 | 75 |
| MIMAT0028995 | oan-miR-7422a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028631 | mdo-miR-7315-3p | 7 | __...... | 2 | 75 |
| MIMAT0028392 | mmu-miR-7212-5p | 1 | __...... | 6 | 75 |
| MIMAT0028220 | hsa-miR-7155-5p | 1 | __...... | 6 | 75 |
| MIMAT0028131 | mmu-miR-7117-5p | 1 | __...... | 6 | 75 |
| MIMAT0027942 | mmu-miR-7019-5p | 2 | __...... | 7 | 75 |
| MIMAT0027918 | mmu-miR-7007-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027814 | mmu-miR-6957-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027452 | hsa-miR-6776-5p | 1 | __...... | 6 | 75 |
| MIMAT0027378 | hsa-miR-6738-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025796 | gga-miR-6690-5p | 7 | ......__ | 2 | 75 |
| MIMAT0025724 | gga-miR-6628-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025552 | bta-miR-6523a | 1 | __...... | 6 | 75 |
| MIMAT0025529 | bta-miR-3154 | 6 | ......__ | 1 | 75 |
| MIMAT0025258 | ptc-miR6439b | 8 | ......__ | 3 | 75 |
| MIMAT0025099 | mmu-miR-6356 | 8 | __...... | 3 | 75 |
| MIMAT0025057 | rno-miR-3075 | 3 | __...... | 8 | 75 |
| MIMAT0027295 | ppe-miR6270 | 1 | _......_ | 6 | 75 |
| MIMAT0024627 | mml-miR-3154 | 6 | ......__ | 1 | 75 |
| MIMAT0024608 | ptr-miR-3154 | 6 | ......__ | 1 | 75 |
| MIMAT0024402 | ppy-miR-3154 | 6 | ......__ | 1 | 75 |
| MIMAT0024376 | ppy-miR-4782 | 1 | _......_ | 6 | 75 |
| MIMAT0024230 | ggo-miR-488 | 6 | __...... | 1 | 75 |
| MIMAT0024042 | ptr-miR-3192 | 1 | __...... | 6 | 75 |
| MIMAT0023352 | hco-miR-5902-5p | 1 | __...... | 6 | 75 |
| MIMAT0022500 | hsa-miR-5706 | 1 | _......_ | 6 | 75 |
| MIMAT0022374 | mmu-miR-5623-3p | 2 | _......_ | 7 | 75 |
| MIMAT0022357 | mmu-miR-1231-5p | 1 | __...... | 6 | 75 |
| MIMAT0022293 | hsa-miR-1295b-5p | 8 | __...... | 3 | 75 |
| MIMAT0022148 | osa-miR5514 | 7 | __...... | 2 | 75 |
| MIMAT0021580 | asu-miR-5359-5p | 1 | __...... | 6 | 75 |
| MIMAT0021548 | asu-miR-5348-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021404 | rmi-miR-5331 | 7 | _......_ | 2 | 75 |
| MIMAT0021310 | mtr-miR2629h | 7 | ......__ | 2 | 75 |
| MIMAT0021120 | hsa-miR-5189-5p | 1 | __...... | 6 | 75 |
| MIMAT0021098 | osa-miR5150-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020485 | bfl-miR-4894 | 1 | __...... | 6 | 75 |
| MIMAT0020080 | bfl-miR-129b | 3 | ......__ | 8 | 75 |
| MIMAT0019944 | hsa-miR-4782-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019911 | hsa-miR-4762-3p | 1 | ......__ | 6 | 75 |
| MIMAT0019796 | hsa-miR-4700-5p | 1 | __...... | 6 | 75 |
| MIMAT0019309 | oar-miR-134-3p | 1 | __...... | 6 | 75 |
| MIMAT0018339 | gma-miR156g | 7 | ......__ | 2 | 75 |
| MIMAT0018761 | tca-miR-3852-3p | 2 | ......__ | 7 | 75 |
| MIMAT0018131 | pab-miR3699 | 8 | ......__ | 3 | 75 |
| MIMAT0018124 | pab-miR950-3p | 1 | __...... | 6 | 75 |
| MIMAT0016868 | hsa-miR-4314 | 2 | __...... | 7 | 75 |
| MIMAT0016785 | cin-miR-4176-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016404 | cin-miR-96-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017819 | rno-miR-3557-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016303 | sja-miR-3494 | 8 | ......__ | 3 | 75 |
| MIMAT0016240 | ppy-miR-1912 | 8 | __...... | 3 | 75 |
| MIMAT0016220 | ppy-miR-1299 | 1 | _......_ | 6 | 75 |
| MIMAT0016208 | ppy-miR-1285b | 1 | __...... | 6 | 75 |
| MIMAT0015833 | ppy-miR-330-5p | 3 | __...... | 8 | 75 |
| MIMAT0015812 | ppy-miR-298 | 8 | ......__ | 3 | 75 |
| MIMAT0015508 | bmo-miR-3321 | 6 | ......__ | 1 | 75 |
| MIMAT0015076 | hsa-miR-3192-5p | 1 | __...... | 6 | 75 |
| MIMAT0015062 | hsa-miR-3182 | 2 | ......__ | 7 | 75 |
| MIMAT0015028 | hsa-miR-3154 | 6 | ......__ | 1 | 75 |
| MIMAT0014901 | mmu-miR-3090-5p | 2 | __...... | 7 | 75 |
| MIMAT0014858 | mmu-miR-3075-5p | 3 | __...... | 8 | 75 |
| MIMAT0014489 | tgu-miR-2979-5p | 7 | _......_ | 2 | 75 |
| MIMAT0014446 | cel-miR-2953-5p | 8 | ......__ | 3 | 75 |
| MIMAT0013201 | eca-miR-1912 | 8 | __...... | 3 | 75 |
| MIMAT0013012 | eca-miR-330 | 3 | __...... | 8 | 75 |
| MIMAT0012631 | bmo-miR-2751 | 2 | __...... | 7 | 75 |
| MIMAT0012322 | dps-miR-2533 | 1 | _......_ | 6 | 75 |
| MIMAT0012051 | bta-miR-2464-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012024 | bta-miR-2447 | 1 | __...... | 6 | 75 |
| MIMAT0012000 | bta-miR-2430 | 1 | __...... | 6 | 75 |
| MIMAT0011891 | bta-miR-2355-5p | 6 | __...... | 1 | 75 |
| MIMAT0011674 | ppc-miR-2248 | 8 | _......_ | 3 | 75 |
| MIMAT0009903 | cfa-miR-488 | 6 | __...... | 1 | 75 |
| MIMAT0009893 | cfa-miR-330 | 3 | __...... | 8 | 75 |
| MIMAT0009814 | nve-miR-2045-5p | 7 | __...... | 2 | 75 |
| MIMAT0008081 | ptr-miR-298 | 8 | ......__ | 3 | 75 |
| MIMAT0008018 | ptr-miR-1299 | 1 | _......_ | 6 | 75 |
| MIMAT0008004 | ptr-miR-1285 | 1 | __...... | 6 | 75 |
| MIMAT0007969 | ptr-miR-1237 | 3 | ......__ | 8 | 75 |
| MIMAT0007887 | hsa-miR-1912 | 8 | __...... | 3 | 75 |
| MIMAT0026882 | mml-miR-488-5p | 6 | __...... | 1 | 75 |
| MIMAT0006270 | mml-miR-330-5p | 3 | __...... | 8 | 75 |
| MIMAT0006254 | mml-miR-298 | 8 | ......__ | 3 | 75 |
| MIMAT0007721 | gga-miR-1804 | 7 | ......__ | 2 | 75 |
| MIMAT0007708 | gga-miR-1794 | 7 | _......_ | 2 | 75 |
| MIMAT0007570 | gga-miR-1683 | 1 | __...... | 6 | 75 |
| MIMAT0006027 | odi-miR-1476-5p | 1 | __...... | 6 | 75 |
| MIMAT0006026 | odi-miR-1475 | 1 | __...... | 6 | 75 |
| MIMAT0007247 | oan-miR-1419c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005887 | hsa-miR-1299 | 1 | _......_ | 6 | 75 |
| MIMAT0005876 | hsa-miR-1285-3p | 1 | __...... | 6 | 75 |
| MIMAT0005592 | hsa-miR-1237-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005552 | mcmv-miR-m88-1-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017320 | rno-miR-488-5p | 6 | __...... | 1 | 75 |
| MIMAT0005240 | smo-miR1088-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005465 | dme-miR-954-5p | 1 | __...... | 6 | 75 |
| MIMAT0004989 | pta-miR156b | 6 | ......__ | 1 | 75 |
| MIMAT0004988 | pta-miR156a | 6 | ......__ | 1 | 75 |
| MIMAT0004389 | cre-miR907 | 2 | ......__ | 7 | 75 |
| MIMAT0004901 | hsa-miR-298 | 8 | ......__ | 3 | 75 |
| MIMAT0003449 | mmu-miR-488-5p | 6 | __...... | 1 | 75 |
| MIMAT0002804 | hsa-miR-488-5p | 6 | __...... | 1 | 75 |
| MIMAT0004693 | hsa-miR-330-5p | 3 | __...... | 8 | 75 |
| MIMAT0004642 | mmu-miR-330-5p | 3 | __...... | 8 | 75 |
| MIMAT0004641 | rno-miR-330-5p | 3 | __...... | 8 | 75 |
| MIMAT0031891 | cel-miR-254-5p | 8 | ......__ | 3 | 75 |
