| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaacggca | 8 | ||
| MIMAT0030830 | prd-miR-7965-5p | 7 | _....... | 1 | 87 |
| MIMAT0024243 | ggo-miR-337 | 1 | ......._ | 7 | 87 |
| MIMAT0019024 | hsa-miR-548al | 1 | _....... | 7 | 87 |
| MIMAT0016441 | cin-miR-4000h-3p | 7 | ......._ | 1 | 87 |
| MIMAT0017879 | rno-miR-3585-3p | 2 | ......._ | 8 | 87 |
| MIMAT0015838 | ppy-miR-337-5p | 1 | ......._ | 7 | 87 |
| MIMAT0013134 | eca-miR-337-5p | 1 | ......._ | 7 | 87 |
| MIMAT0011631 | crm-miR-2231-5p | 1 | _....... | 7 | 87 |
| MIMAT0006275 | mml-miR-337-5p | 1 | ......._ | 7 | 87 |
| MIMAT0004695 | hsa-miR-337-5p | 1 | ......._ | 7 | 87 |
| MIMAT0035220 | dme-miR-9378-3p | 1 | ......g. | 8 | 87 |
| MIMAT0037225 | ata-miR9677-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035804 | tae-miR9677a | 8 | _......_ | 3 | 75 |
| MIMAT0035774 | tae-miR1137b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0034971 | efu-miR-513 | 3 | ......__ | 8 | 75 |
| MIMAT0034581 | eca-miR-9039 | 7 | ......__ | 2 | 75 |
| MIMAT0033780 | pxy-miR-8534-5p | 3 | __...... | 8 | 75 |
| MIMAT0033775 | pxy-miR-8489b | 8 | __...... | 3 | 75 |
| MIMAT0033696 | pxy-miR-8489a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033037 | ppc-miR-2238k-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032940 | ppc-miR-2238i-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032930 | ppc-miR-2238h-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032894 | ppc-miR-2238g-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032856 | ppc-miR-2238f-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031851 | cpa-miR5211 | 7 | __...... | 2 | 75 |
| MIMAT0030575 | prd-miR-7894-3p | 8 | __...... | 3 | 75 |
| MIMAT0030530 | prd-miR-36-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028449 | mmu-miR-7240-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028079 | mmu-miR-7086-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025245 | ptc-miR6442 | 3 | ......__ | 8 | 75 |
| MIMAT0024204 | ggo-miR-887 | 3 | ......__ | 8 | 75 |
| MIMAT0023673 | ame-miR-6049 | 3 | ......__ | 8 | 75 |
| MIMAT0023434 | hco-miR-5939 | 6 | __...... | 1 | 75 |
| MIMAT0023302 | osa-miR5828 | 3 | __...... | 8 | 75 |
| MIMAT0022096 | aca-miR-5464-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021438 | asu-miR-34-3p | 1 | _......_ | 6 | 75 |
| MIMAT0020718 | bdi-miR5174a | 8 | ......__ | 3 | 75 |
| MIMAT0020131 | cel-miR-4923b | 1 | _......_ | 6 | 75 |
| MIMAT0019682 | osa-miR812o-3p | 1 | ......__ | 6 | 75 |
| MIMAT0019668 | osa-miR812m | 3 | ......__ | 8 | 75 |
| MIMAT0019667 | osa-miR812l | 3 | ......__ | 8 | 75 |
| MIMAT0019666 | osa-miR812k | 3 | ......__ | 8 | 75 |
| MIMAT0019019 | hsa-miR-4485-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018964 | hsa-miR-4445-3p | 2 | __...... | 7 | 75 |
| MIMAT0018777 | tca-miR-3049-3p | 7 | ......__ | 2 | 75 |
| MIMAT0018662 | tca-miR-3805b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0018174 | mghv-miR-M1-14-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016609 | cin-miR-4060-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016527 | cin-miR-4019-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016427 | cin-miR-4000c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016122 | ppy-miR-887 | 3 | ......__ | 8 | 75 |
| MIMAT0015801 | ppy-miR-210 | 8 | __...... | 3 | 75 |
| MIMAT0015520 | bmo-miR-3333 | 6 | ......__ | 1 | 75 |
| MIMAT0014235 | aae-miR-980-5p | 8 | _......_ | 3 | 75 |
| MIMAT0015352 | zma-miR397a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0012711 | hvt-miR-H2 | 7 | ......__ | 2 | 75 |
| MIMAT0013598 | bmo-miR-316-3p | 1 | __...... | 6 | 75 |
| MIMAT0013561 | cte-miR-2699-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012405 | dps-miR-2568a-3p | 1 | __...... | 6 | 75 |
| MIMAT0009782 | nve-miR-2031-5p | 2 | __...... | 7 | 75 |
| MIMAT0009137 | osa-miR1320-5p | 3 | ......__ | 8 | 75 |
| MIMAT0008330 | ptr-miR-887 | 3 | ......__ | 8 | 75 |
| MIMAT0006526 | mml-miR-887 | 3 | ......__ | 8 | 75 |
| MIMAT0007439 | gga-miR-1578 | 8 | __...... | 3 | 75 |
| MIMAT0005200 | ppt-miR1071-3p | 8 | ......__ | 3 | 75 |
| MIMAT0004951 | hsa-miR-887-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020312 | cel-miR-53-3p | 2 | __...... | 7 | 75 |
