| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaggaac | 7 | ||
| MIMAT0035850 | bra-miR395a-5p | 7 | ....... | 1 | 100 |
| MIMAT0035848 | bra-miR395c-5p | 7 | ....... | 1 | 100 |
| MIMAT0035846 | bra-miR395b-5p | 7 | ....... | 1 | 100 |
| MIMAT0035844 | bra-miR395d-5p | 7 | ....... | 1 | 100 |
| MIMAT0028546 | mdo-miR-7285-5p | 2 | ....... | 8 | 100 |
| MIMAT0023882 | cgr-miR-298-3p | 1 | ....... | 7 | 100 |
| MIMAT0018205 | hsa-miR-3928-3p | 2 | ....... | 8 | 100 |
| MIMAT0018718 | tca-miR-2944a-5p | 1 | ....... | 7 | 100 |
| MIMAT0016888 | hsa-miR-4326 | 8 | ....... | 2 | 100 |
| MIMAT0017665 | aly-miR395g-5p | 7 | ....... | 1 | 100 |
| MIMAT0017553 | aly-miR395e-5p | 7 | ....... | 1 | 100 |
| MIMAT0005537 | mcmv-miR-m01-3-3p | 2 | ....... | 8 | 100 |
| MIMAT0017007 | mmu-miR-298-3p | 1 | ....... | 7 | 100 |
| MIMAT0037116 | ata-miR395e-5p | 6 | _...... | 1 | 85 |
| MIMAT0034441 | eca-miR-8913 | 6 | ......_ | 1 | 85 |
| MIMAT0034070 | gra-miR7504h | 3 | ......_ | 8 | 85 |
| MIMAT0034069 | gra-miR7504g | 3 | ......_ | 8 | 85 |
| MIMAT0033744 | pxy-miR-8513-5p | 3 | _...... | 8 | 85 |
| MIMAT0033711 | pxy-miR-8499c | 8 | _...... | 3 | 85 |
| MIMAT0032552 | ssa-miR-23b-5p | 8 | _...... | 3 | 85 |
| MIMAT0032459 | ssa-miR-196b-3p | 2 | _...... | 7 | 85 |
| MIMAT0031556 | ppe-miR8130-5p | 8 | _...... | 3 | 85 |
| MIMAT0031403 | mmu-miR-8100 | 3 | ......_ | 8 | 85 |
| MIMAT0030198 | bdi-miR7732-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029953 | osa-miR1437b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029353 | lja-miR7530 | 8 | ......_ | 3 | 85 |
| MIMAT0029159 | ghr-miR7504b | 3 | ......_ | 8 | 85 |
| MIMAT0028409 | mmu-miR-7220-3p | 3 | _...... | 8 | 85 |
| MIMAT0028303 | mml-miR-7179-3p | 3 | _...... | 8 | 85 |
| MIMAT0028293 | mml-miR-7176-3p | 8 | _...... | 3 | 85 |
| MIMAT0027704 | mmu-miR-6902-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027618 | hsa-miR-6859-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025291 | hbr-miR6482 | 2 | _...... | 7 | 85 |
| MIMAT0025114 | mmu-miR-6370 | 3 | _...... | 8 | 85 |
| MIMAT0024876 | osa-miR6253 | 1 | ......_ | 6 | 85 |
| MIMAT0024440 | mse-miR-276 | 2 | _...... | 7 | 85 |
| MIMAT0024311 | mml-miR-873-5p | 3 | _...... | 8 | 85 |
| MIMAT0024167 | ggo-miR-873 | 3 | _...... | 8 | 85 |
| MIMAT0023864 | cgr-miR-23b-5p | 8 | _...... | 3 | 85 |
| MIMAT0023673 | ame-miR-6049 | 1 | _...... | 6 | 85 |
| MIMAT0023664 | ame-miR-6042 | 2 | _...... | 7 | 85 |
| MIMAT0023035 | tur-miR-276-3p | 2 | _...... | 7 | 85 |
| MIMAT0021897 | aca-miR-23b-5p | 8 | _...... | 3 | 85 |
| MIMAT0019616 | pma-miR-4583 | 3 | _...... | 8 | 85 |
| MIMAT0019031 | hsa-miR-4496 | 1 | ......_ | 6 | 85 |
| MIMAT0018430 | nlo-miR-276 | 2 | _...... | 7 | 85 |
| MIMAT0018406 | ngi-miR-276 | 2 | _...... | 7 | 85 |
| MIMAT0018326 | gma-miR4407 | 3 | ......_ | 8 | 85 |
| MIMAT0018919 | isc-miR-276 | 2 | _...... | 7 | 85 |
| MIMAT0018190 | hsa-miR-3916 | 3 | ......_ | 8 | 85 |
| MIMAT0018189 | hsa-miR-3915 | 3 | ......_ | 8 | 85 |
| MIMAT0018188 | hsa-miR-3914 | 2 | _...... | 7 | 85 |
| MIMAT0018810 | tca-miR-2944c-5p | 3 | _...... | 8 | 85 |
| MIMAT0018746 | tca-miR-2944b-5p | 3 | _...... | 8 | 85 |
| MIMAT0018728 | tca-miR-3842-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017942 | ath-miR4221 | 8 | ......_ | 3 | 85 |
| MIMAT0016622 | cin-miR-4067-5p | 3 | _...... | 8 | 85 |
| MIMAT0016530 | cin-miR-4018b-5p | 1 | _...... | 6 | 85 |
| MIMAT0016966 | cin-miR-4001i-5p | 1 | _...... | 6 | 85 |
| MIMAT0017888 | rno-miR-3589 | 1 | ......_ | 6 | 85 |
| MIMAT0016390 | gga-miR-3539 | 3 | ......_ | 8 | 85 |
| MIMAT0016111 | ppy-miR-873 | 3 | _...... | 8 | 85 |
| MIMAT0015687 | nvi-miR-276 | 2 | _...... | 7 | 85 |
| MIMAT0017785 | esi-miR3456-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019208 | hsa-miR-3074-5p | 6 | _...... | 1 | 85 |
| MIMAT0014988 | hsa-miR-3125 | 3 | ......_ | 8 | 85 |
| MIMAT0014856 | mmu-miR-3074-5p | 6 | _...... | 1 | 85 |
| MIMAT0014792 | api-miR-3051 | 2 | _...... | 7 | 85 |
| MIMAT0014393 | cqu-miR-276-3p | 2 | _...... | 7 | 85 |
| MIMAT0014304 | aae-miR-2944b-5p | 3 | _...... | 8 | 85 |
| MIMAT0014302 | aae-miR-2944a-5p | 3 | _...... | 8 | 85 |
| MIMAT0014223 | aae-miR-276-3p | 2 | _...... | 7 | 85 |
| MIMAT0014133 | api-miR-276 | 2 | _...... | 7 | 85 |
| MIMAT0016952 | rlcv-miR-rL1-28-3p | 1 | ......_ | 6 | 85 |
| MIMAT0015345 | zma-miR395m-5p | 6 | _...... | 1 | 85 |
| MIMAT0015344 | zma-miR395l-5p | 6 | _...... | 1 | 85 |
| MIMAT0013120 | eca-miR-873 | 3 | _...... | 8 | 85 |
| MIMAT0013757 | bmo-miR-2840 | 2 | _...... | 7 | 85 |
| MIMAT0012652 | dpu-miR-276 | 2 | _...... | 7 | 85 |
| MIMAT0012293 | dps-miR-276c | 2 | _...... | 7 | 85 |
| MIMAT0012058 | bta-miR-2468 | 3 | _...... | 8 | 85 |
| MIMAT0010139 | lmi-miR-276-3p | 2 | _...... | 7 | 85 |
| MIMAT0009377 | bta-miR-873 | 3 | _...... | 8 | 85 |
| MIMAT0009125 | dya-miR-276b | 2 | _...... | 7 | 85 |
| MIMAT0009117 | dya-miR-276a | 2 | _...... | 7 | 85 |
| MIMAT0009101 | dya-miR-5 | 3 | _...... | 8 | 85 |
| MIMAT0009041 | dwi-miR-5 | 3 | _...... | 8 | 85 |
| MIMAT0009019 | dwi-miR-276b-3p | 2 | _...... | 7 | 85 |
| MIMAT0009008 | dwi-miR-276a-3p | 2 | _...... | 7 | 85 |
| MIMAT0008961 | dvi-miR-5-5p | 3 | _...... | 8 | 85 |
| MIMAT0008943 | dvi-miR-276a-3p | 2 | _...... | 7 | 85 |
| MIMAT0008942 | dvi-miR-276b-3p | 2 | _...... | 7 | 85 |
| MIMAT0008895 | dsi-miR-276b | 2 | _...... | 7 | 85 |
| MIMAT0008892 | dsi-miR-276a | 2 | _...... | 7 | 85 |
| MIMAT0008890 | dsi-miR-5 | 3 | _...... | 8 | 85 |
| MIMAT0008829 | dse-miR-5 | 3 | _...... | 8 | 85 |
| MIMAT0008791 | dse-miR-276a | 2 | _...... | 7 | 85 |
| MIMAT0008778 | dse-miR-276b | 2 | _...... | 7 | 85 |
| MIMAT0008750 | dpe-miR-276b | 2 | _...... | 7 | 85 |
| MIMAT0008714 | dpe-miR-5 | 3 | _...... | 8 | 85 |
| MIMAT0008705 | dpe-miR-276a | 2 | _...... | 7 | 85 |
| MIMAT0008691 | dmo-miR-5 | 3 | _...... | 8 | 85 |
| MIMAT0008654 | dmo-miR-276a | 2 | _...... | 7 | 85 |
| MIMAT0008631 | dmo-miR-276b | 2 | _...... | 7 | 85 |
| MIMAT0008576 | dgr-miR-276a-3p | 2 | _...... | 7 | 85 |
| MIMAT0008574 | dgr-miR-276b-3p | 2 | _...... | 7 | 85 |
| MIMAT0008570 | dgr-miR-5 | 3 | _...... | 8 | 85 |
| MIMAT0008542 | der-miR-276b | 2 | _...... | 7 | 85 |
| MIMAT0008529 | der-miR-276a | 2 | _...... | 7 | 85 |
| MIMAT0008482 | der-miR-5 | 3 | _...... | 8 | 85 |
| MIMAT0008457 | dan-miR-5 | 3 | _...... | 8 | 85 |
| MIMAT0008455 | dan-miR-276a | 2 | _...... | 7 | 85 |
| MIMAT0008446 | dan-miR-276b | 2 | _...... | 7 | 85 |
| MIMAT0008381 | tca-miR-276-3p | 2 | _...... | 7 | 85 |
| MIMAT0008324 | ptr-miR-873 | 3 | _...... | 8 | 85 |
| MIMAT0026800 | mml-miR-23b-5p | 8 | _...... | 3 | 85 |
| MIMAT0007566 | gga-miR-1680-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007450 | gga-miR-1588 | 2 | _...... | 7 | 85 |
| MIMAT0005339 | rno-miR-873-5p | 3 | _...... | 8 | 85 |
| MIMAT0004953 | hsa-miR-873-5p | 3 | _...... | 8 | 85 |
| MIMAT0004936 | mmu-miR-873a-5p | 3 | _...... | 8 | 85 |
| MIMAT0026713 | mdo-miR-23b-5p | 8 | _...... | 3 | 85 |
| MIMAT0026710 | mdo-miR-23a-5p | 7 | _...... | 2 | 85 |
| MIMAT0012538 | bta-miR-23b-5p | 8 | _...... | 3 | 85 |
| MIMAT0015232 | bmo-miR-276-3p | 2 | _...... | 7 | 85 |
| MIMAT0022714 | hsa-miR-766-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026599 | mml-miR-23a-5p | 7 | _...... | 2 | 85 |
| MIMAT0006782 | aga-miR-276-3p | 2 | _...... | 7 | 85 |
| MIMAT0001480 | ame-miR-276 | 2 | _...... | 7 | 85 |
| MIMAT0001240 | dps-miR-276b | 2 | _...... | 7 | 85 |
| MIMAT0001239 | dps-miR-276a | 2 | _...... | 7 | 85 |
| MIMAT0001207 | dps-miR-5 | 3 | _...... | 8 | 85 |
| MIMAT0026546 | gga-miR-23b-5p | 8 | _...... | 3 | 85 |
| MIMAT0017166 | rno-miR-298-3p | 1 | _...... | 6 | 85 |
| MIMAT0017099 | rno-miR-23b-5p | 8 | _...... | 3 | 85 |
| MIMAT0000354 | dme-miR-276b-3p | 2 | _...... | 7 | 85 |
| MIMAT0000337 | dme-miR-276a-3p | 2 | _...... | 7 | 85 |
| MIMAT0016980 | mmu-miR-23b-5p | 8 | _...... | 3 | 85 |
| MIMAT0000110 | dme-miR-5-5p | 3 | _...... | 8 | 85 |
