| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gccgcgt | 7 | ||
| MIMAT0005539 | mcmv-miR-m01-4-3p | 2 | ....... | 8 | 100 |
| MIMAT0035712 | bhv5-miR-B8 | 6 | ......_ | 1 | 85 |
| MIMAT0032854 | ppc-miR-235-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031415 | mmu-miR-8109 | 3 | ......_ | 8 | 85 |
| MIMAT0031406 | mmu-miR-8102 | 8 | _...... | 3 | 85 |
| MIMAT0030739 | prd-miR-7940a-3p | 8 | _...... | 3 | 85 |
| MIMAT0029808 | mmu-miR-7036b-5p | 6 | _...... | 1 | 85 |
| MIMAT0029798 | mmu-miR-7648-5p | 1 | _...... | 6 | 85 |
| MIMAT0029563 | ipu-miR-7564 | 2 | _...... | 7 | 85 |
| MIMAT0029561 | ipu-miR-7563b | 2 | _...... | 7 | 85 |
| MIMAT0029560 | ipu-miR-7563a | 3 | _...... | 8 | 85 |
| MIMAT0022330 | cin-miR-5602-3p | 3 | _...... | 8 | 85 |
| MIMAT0019011 | hsa-miR-4479 | 8 | ......_ | 3 | 85 |
| MIMAT0016233 | ppy-miR-1471 | 3 | _...... | 8 | 85 |
| MIMAT0015068 | hsa-miR-3186-3p | 8 | _...... | 3 | 85 |
| MIMAT0014433 | cqu-miR-2951-3p | 3 | _...... | 8 | 85 |
| MIMAT0013770 | bmo-miR-2848 | 8 | ......_ | 3 | 85 |
| MIMAT0011290 | dre-miR-2185-3p | 1 | ......_ | 6 | 85 |
| MIMAT0007349 | hsa-miR-1471 | 3 | _...... | 8 | 85 |
| MIMAT0007151 | oan-miR-1385 | 3 | _...... | 8 | 85 |
| MIMAT0003490 | mmu-miR-700-3p | 7 | _...... | 2 | 85 |
