| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcggcga | 7 | ||
| MIMAT0035712 | bhv5-miR-B8 | 2 | ....... | 8 | 100 |
| MIMAT0033753 | pxy-miR-8516 | 1 | ....... | 7 | 100 |
| MIMAT0033715 | pxy-miR-8503 | 2 | ....... | 8 | 100 |
| MIMAT0018018 | vvi-miR3627-3p | 7 | ....... | 1 | 100 |
| MIMAT0016913 | hsa-miR-4285 | 1 | ....... | 7 | 100 |
| MIMAT0017773 | esi-miR3467-5p | 2 | ....... | 8 | 100 |
| MIMAT0012432 | dsi-miR-986-3p | 2 | ....... | 8 | 100 |
| MIMAT0010072 | osa-miR2104 | 1 | ....... | 7 | 100 |
| MIMAT0020884 | dme-miR-986-3p | 2 | ....... | 8 | 100 |
| MIMAT0035710 | bhv5-miR-B13 | 3 | _...... | 8 | 85 |
| MIMAT0033770 | pxy-miR-8528b | 1 | ......_ | 6 | 85 |
| MIMAT0033748 | pxy-miR-8528a | 3 | ......_ | 8 | 85 |
| MIMAT0033282 | ppc-miR-8360-5p | 2 | _...... | 7 | 85 |
| MIMAT0032878 | ppc-miR-8222-5p | 2 | _...... | 7 | 85 |
| MIMAT0031379 | osa-miR531c | 7 | _...... | 2 | 85 |
| MIMAT0030817 | prd-miR-7950b-3p | 3 | _...... | 8 | 85 |
| MIMAT0030771 | prd-miR-7950a-3p | 3 | _...... | 8 | 85 |
| MIMAT0030713 | prd-miR-7950c-3p | 3 | _...... | 8 | 85 |
| MIMAT0028166 | hcmv-miR-US22-3p | 6 | _...... | 1 | 85 |
| MIMAT0027639 | hsa-miR-6869-3p | 6 | ......_ | 1 | 85 |
| MIMAT0023670 | ame-miR-6012 | 3 | _...... | 8 | 85 |
| MIMAT0023566 | tca-miR-6012-3p | 3 | _...... | 8 | 85 |
| MIMAT0026458 | hhv6b-miR-Ro6-2-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021682 | sbi-miR5384 | 8 | ......_ | 3 | 85 |
| MIMAT0021011 | gma-miR4993 | 3 | ......_ | 8 | 85 |
| MIMAT0020222 | dme-miR-4985-3p | 6 | _...... | 1 | 85 |
| MIMAT0020141 | cel-miR-4935 | 3 | _...... | 8 | 85 |
| MIMAT0019630 | pma-miR-4597 | 6 | _...... | 1 | 85 |
| MIMAT0018994 | hsa-miR-4467 | 3 | ......_ | 8 | 85 |
| MIMAT0015386 | bmo-miR-2808d | 2 | _...... | 7 | 85 |
| MIMAT0013844 | bta-miR-2886 | 8 | ......_ | 3 | 85 |
| MIMAT0013694 | bmo-miR-2794 | 2 | _...... | 7 | 85 |
| MIMAT0012627 | bmo-miR-2748 | 3 | _...... | 8 | 85 |
| MIMAT0009818 | nve-miR-2047-5p | 7 | _...... | 2 | 85 |
| MIMAT0007768 | osa-miR1848 | 8 | _...... | 3 | 85 |
| MIMAT0007763 | osa-miR531b | 7 | _...... | 2 | 85 |
| MIMAT0007417 | gga-miR-1560-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026773 | mdo-miR-1549-5p | 6 | _...... | 1 | 85 |
| MIMAT0005539 | mcmv-miR-m01-4-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005391 | cre-miR1150.2 | 6 | _...... | 1 | 85 |
| MIMAT0002887 | osa-miR531a | 7 | _...... | 2 | 85 |
| MIMAT0031980 | dre-miR-181c-3p | 7 | _...... | 2 | 85 |
| MIMAT0000327 | cel-miR-271 | 6 | _...... | 1 | 85 |
