| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gctaaac | 7 | ||
| MIMAT0021362 | mtr-miR5294c | 1 | ....... | 7 | 100 |
| MIMAT0021361 | mtr-miR5294b | 1 | ....... | 7 | 100 |
| MIMAT0021360 | mtr-miR5294a | 1 | ....... | 7 | 100 |
| MIMAT0018720 | tca-miR-3838-5p | 7 | ....... | 1 | 100 |
| MIMAT0002191 | kshv-miR-K12-4-5p | 2 | ....... | 8 | 100 |
| MIMAT0037050 | ssc-miR-9832-3p | 6 | _...... | 1 | 85 |
| MIMAT0036392 | gma-miR9758 | 7 | _...... | 2 | 85 |
| MIMAT0035633 | dvi-miR-9541-3p | 6 | _...... | 1 | 85 |
| MIMAT0034333 | cfa-miR-8840 | 6 | ......_ | 1 | 85 |
| MIMAT0034267 | gra-miR7502f | 6 | ......_ | 1 | 85 |
| MIMAT0030583 | prd-miR-7896-3p | 3 | _...... | 8 | 85 |
| MIMAT0028987 | oan-miR-7419-3p | 7 | _...... | 2 | 85 |
| MIMAT0028189 | dev-miR-D16-3p | 1 | _...... | 6 | 85 |
| MIMAT0032128 | ath-miR5639-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032121 | gma-miR5035-3p | 7 | _...... | 2 | 85 |
| MIMAT0018418 | nlo-miR-282 | 8 | ......_ | 3 | 85 |
| MIMAT0018056 | dme-miR-3641-3p | 2 | _...... | 7 | 85 |
| MIMAT0015794 | ppy-miR-199b-5p | 8 | _...... | 3 | 85 |
| MIMAT0015693 | nvi-miR-282 | 8 | ......_ | 3 | 85 |
| MIMAT0017626 | aly-miR840-3p | 8 | _...... | 3 | 85 |
| MIMAT0014926 | mmu-miR-344b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0013454 | mtr-miR2655o | 7 | _...... | 2 | 85 |
| MIMAT0013453 | mtr-miR2655n | 7 | _...... | 2 | 85 |
| MIMAT0013452 | mtr-miR2655m | 7 | _...... | 2 | 85 |
| MIMAT0013451 | mtr-miR2655l | 7 | _...... | 2 | 85 |
| MIMAT0013450 | mtr-miR2655k | 7 | _...... | 2 | 85 |
| MIMAT0013449 | mtr-miR2655j | 7 | _...... | 2 | 85 |
| MIMAT0013448 | mtr-miR2655i | 7 | _...... | 2 | 85 |
| MIMAT0013447 | mtr-miR2655h | 7 | _...... | 2 | 85 |
| MIMAT0013446 | mtr-miR2655g | 7 | _...... | 2 | 85 |
| MIMAT0013445 | mtr-miR2655f | 7 | _...... | 2 | 85 |
| MIMAT0013444 | mtr-miR2655e | 7 | _...... | 2 | 85 |
| MIMAT0013443 | mtr-miR2655d | 7 | _...... | 2 | 85 |
| MIMAT0013442 | mtr-miR2655c | 7 | _...... | 2 | 85 |
| MIMAT0013440 | mtr-miR2655a | 7 | _...... | 2 | 85 |
| MIMAT0009211 | osa-miR1850.3 | 8 | _...... | 3 | 85 |
| MIMAT0007117 | oan-miR-1380-3p | 6 | _...... | 1 | 85 |
| MIMAT0032021 | ath-miR840-3p | 8 | _...... | 3 | 85 |
| MIMAT0001484 | ame-miR-282 | 8 | ......_ | 3 | 85 |
