| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gctcggg | 7 | ||
| MIMAT0029097 | gga-miR-7471-3p | 7 | ....... | 1 | 100 |
| MIMAT0013648 | bmo-miR-375-5p | 8 | ....... | 2 | 100 |
| MIMAT0033875 | atr-miR8588 | 6 | ......_ | 1 | 85 |
| MIMAT0032919 | ppc-miR-8233-3p | 8 | _...... | 3 | 85 |
| MIMAT0029899 | mmu-miR-7686-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028985 | oan-miR-7418-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028269 | mml-miR-7167-3p | 1 | _...... | 6 | 85 |
| MIMAT0028268 | mml-miR-7167-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027834 | mmu-miR-6966-5p | 1 | _...... | 6 | 85 |
| MIMAT0027442 | hsa-miR-6771-5p | 1 | _...... | 6 | 85 |
| MIMAT0027355 | hsa-miR-6727-5p | 1 | _...... | 6 | 85 |
| MIMAT0025314 | prv-miR-LLT10b | 6 | ......_ | 1 | 85 |
| MIMAT0025313 | prv-miR-LLT10a | 6 | ......_ | 1 | 85 |
| MIMAT0025022 | hsv1-miR-H26 | 3 | ......_ | 8 | 85 |
| MIMAT0023983 | cgr-miR-542-5p | 1 | _...... | 6 | 85 |
| MIMAT0023545 | ame-miR-6003-5p | 3 | _...... | 8 | 85 |
| MIMAT0022117 | osa-miR5484 | 8 | ......_ | 3 | 85 |
| MIMAT0020140 | cel-miR-4934 | 8 | ......_ | 3 | 85 |
| MIMAT0019887 | hsa-miR-4750-5p | 1 | _...... | 6 | 85 |
| MIMAT0019870 | hsa-miR-4740-3p | 7 | _...... | 2 | 85 |
| MIMAT0019643 | pma-miR-4609 | 3 | ......_ | 8 | 85 |
| MIMAT0019614 | pma-miR-4581 | 1 | ......_ | 6 | 85 |
| MIMAT0018191 | hsa-miR-3917 | 1 | ......_ | 6 | 85 |
| MIMAT0017808 | rno-miR-3550 | 6 | ......_ | 1 | 85 |
| MIMAT0015446 | bmo-miR-3262 | 3 | ......_ | 8 | 85 |
| MIMAT0014869 | mmu-miR-3080-3p | 3 | _...... | 8 | 85 |
| MIMAT0013237 | eca-miR-542-5p | 1 | _...... | 6 | 85 |
| MIMAT0012857 | rno-miR-678 | 3 | _...... | 8 | 85 |
| MIMAT0011960 | bta-miR-2403 | 1 | _...... | 6 | 85 |
| MIMAT0011697 | ppc-miR-2263 | 3 | _...... | 8 | 85 |
| MIMAT0009952 | bta-miR-1225-3p | 6 | ......_ | 1 | 85 |
| MIMAT0007867 | mmu-miR-1895 | 8 | _...... | 3 | 85 |
| MIMAT0007524 | gga-miR-1648-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007437 | gga-miR-1576 | 1 | _...... | 6 | 85 |
| MIMAT0006943 | oan-miR-1351-5p | 6 | ......_ | 1 | 85 |
| MIMAT0005211 | ppt-miR1079-5p | 8 | ......_ | 3 | 85 |
| MIMAT0003831 | bta-miR-423-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003178 | rno-miR-542-5p | 1 | _...... | 6 | 85 |
| MIMAT0003171 | mmu-miR-542-5p | 1 | _...... | 6 | 85 |
