| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggaaggt | 7 | ||
| MIMAT0037031 | ssc-miR-9813-5p | 2 | ....... | 8 | 100 |
| MIMAT0033650 | sma-miR-8465-3p | 1 | ....... | 7 | 100 |
| MIMAT0029896 | mmu-miR-7685-5p | 7 | ....... | 1 | 100 |
| MIMAT0025865 | blv-miR-B5-5p | 2 | ....... | 8 | 100 |
| MIMAT0024344 | mml-miR-4650 | 2 | ....... | 8 | 100 |
| MIMAT0018846 | tca-miR-3877-5p | 7 | ....... | 1 | 100 |
| MIMAT0018090 | hsa-miR-3667-3p | 7 | ....... | 1 | 100 |
| MIMAT0014461 | tgu-miR-2961 | 2 | ....... | 8 | 100 |
| MIMAT0037034 | ssc-miR-9816-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036397 | gma-miR9761 | 2 | _...... | 7 | 85 |
| MIMAT0036254 | chi-miR-493-3p | 2 | _...... | 7 | 85 |
| MIMAT0035920 | chi-miR-1248-5p | 6 | _...... | 1 | 85 |
| MIMAT0035739 | rno-miR-3084a-5p | 3 | _...... | 8 | 85 |
| MIMAT0035388 | nve-miR-9429-5p | 6 | _...... | 1 | 85 |
| MIMAT0034609 | eca-miR-9064 | 3 | _...... | 8 | 85 |
| MIMAT0034313 | cfa-miR-8823 | 8 | ......_ | 3 | 85 |
| MIMAT0033901 | atr-miR8610.1 | 6 | _...... | 1 | 85 |
| MIMAT0033371 | str-miR-252b-3p | 6 | _...... | 1 | 85 |
| MIMAT0031584 | bbe-miR-129b-5p | 6 | _...... | 1 | 85 |
| MIMAT0030671 | prd-miR-7917-3p | 2 | _...... | 7 | 85 |
| MIMAT0030512 | prd-miR-7878-5p | 2 | _...... | 7 | 85 |
| MIMAT0030486 | prd-miR-7871-5p | 2 | _...... | 7 | 85 |
| MIMAT0030255 | bdi-miR7723b-3p | 3 | _...... | 8 | 85 |
| MIMAT0029898 | mmu-miR-7686-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029353 | lja-miR7530 | 6 | ......_ | 1 | 85 |
| MIMAT0028568 | mdo-miR-7292-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028267 | mml-miR-7166-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028204 | dre-miR-7146-3p | 2 | _...... | 7 | 85 |
| MIMAT0028061 | mmu-miR-7077-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028012 | mmu-miR-7054-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027900 | mmu-miR-6999-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027868 | mmu-miR-6983-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027781 | mmu-miR-6940-3p | 8 | _...... | 3 | 85 |
| MIMAT0027719 | mmu-miR-6909-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027703 | mmu-miR-6901-3p | 7 | _...... | 2 | 85 |
| MIMAT0027652 | hsa-miR-6876-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025768 | gga-miR-6667-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025692 | gga-miR-6597-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025378 | ssc-miR-493-3p | 2 | _...... | 7 | 85 |
| MIMAT0024598 | hsa-miR-6125 | 3 | ......_ | 8 | 85 |
| MIMAT0022275 | hsa-miR-5581-5p | 8 | ......_ | 3 | 85 |
| MIMAT0021128 | hsa-miR-5196-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020080 | bfl-miR-129b | 6 | _...... | 1 | 85 |
| MIMAT0019882 | hsa-miR-4747-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019842 | hsa-miR-4724-3p | 8 | _...... | 3 | 85 |
| MIMAT0019238 | oar-miR-493-3p | 2 | _...... | 7 | 85 |
| MIMAT0019003 | hsa-miR-4476 | 3 | ......_ | 8 | 85 |
| MIMAT0018298 | gma-miR4386 | 3 | _...... | 8 | 85 |
| MIMAT0018913 | tca-miR-3905-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016846 | hsa-miR-4297 | 8 | ......_ | 3 | 85 |
| MIMAT0016769 | cin-miR-4162-3p | 3 | _...... | 8 | 85 |
| MIMAT0016173 | ppy-miR-1248 | 6 | _...... | 1 | 85 |
| MIMAT0015914 | ppy-miR-493 | 2 | _...... | 7 | 85 |
| MIMAT0014600 | tgu-miR-2996 | 6 | ......_ | 1 | 85 |
| MIMAT0013163 | eca-miR-493b | 2 | _...... | 7 | 85 |
| MIMAT0026950 | mml-miR-524-3p | 1 | _...... | 6 | 85 |
| MIMAT0012725 | iltv-miR-I2 | 1 | ......_ | 6 | 85 |
| MIMAT0009972 | bta-miR-1248 | 6 | _...... | 1 | 85 |
| MIMAT0009333 | bta-miR-493 | 2 | _...... | 7 | 85 |
| MIMAT0007974 | ptr-miR-1248 | 6 | _...... | 1 | 85 |
| MIMAT0006711 | cfa-miR-493 | 2 | _...... | 7 | 85 |
| MIMAT0006355 | mml-miR-493-3p | 2 | _...... | 7 | 85 |
| MIMAT0007191 | oan-miR-1393 | 8 | _...... | 3 | 85 |
| MIMAT0005900 | hsa-miR-1248 | 6 | _...... | 1 | 85 |
| MIMAT0005078 | ppt-miR902g-3p | 3 | _...... | 8 | 85 |
| MIMAT0005074 | ppt-miR902e-3p | 3 | _...... | 8 | 85 |
| MIMAT0005072 | ppt-miR902d-3p | 3 | _...... | 8 | 85 |
| MIMAT0005070 | ppt-miR902c-3p | 3 | _...... | 8 | 85 |
| MIMAT0004373 | ppt-miR902b-3p | 3 | _...... | 8 | 85 |
| MIMAT0004372 | ppt-miR902a-3p | 3 | _...... | 8 | 85 |
| MIMAT0004888 | mmu-miR-493-3p | 2 | _...... | 7 | 85 |
| MIMAT0003191 | rno-miR-493-3p | 2 | _...... | 7 | 85 |
| MIMAT0003161 | hsa-miR-493-3p | 2 | _...... | 7 | 85 |
| MIMAT0001325 | ath-miR417 | 1 | _...... | 6 | 85 |
