| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggccgtg | 7 | ||
| MIMAT0033866 | atr-miR8552c | 1 | ....... | 7 | 100 |
| MIMAT0017962 | ssc-miR-4332 | 7 | ....... | 1 | 100 |
| MIMAT0014705 | hsv2-miR-H23-5p | 2 | ....... | 8 | 100 |
| MIMAT0012243 | dps-miR-92c-5p | 2 | ....... | 8 | 100 |
| MIMAT0032060 | dvi-miR-310-5p | 2 | ....... | 8 | 100 |
| MIMAT0020819 | dme-miR-92b-5p | 2 | ....... | 8 | 100 |
| MIMAT0034797 | efu-miR-9209d | 3 | _...... | 8 | 85 |
| MIMAT0032896 | ppc-miR-8226-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032402 | ssa-miR-15d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031528 | ppe-miR7122a-3p | 1 | _...... | 6 | 85 |
| MIMAT0030832 | prd-miR-7964b-5p | 3 | _...... | 8 | 85 |
| MIMAT0030828 | prd-miR-7964a-5p | 3 | _...... | 8 | 85 |
| MIMAT0028263 | mml-miR-7165-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025633 | gga-miR-6564-5p | 2 | _...... | 7 | 85 |
| MIMAT0024862 | mmu-miR-6241 | 6 | _...... | 1 | 85 |
| MIMAT0023700 | hsa-miR-6075 | 6 | ......_ | 1 | 85 |
| MIMAT0023434 | hco-miR-5939 | 2 | _...... | 7 | 85 |
| MIMAT0021469 | asu-miR-72-3p | 2 | _...... | 7 | 85 |
| MIMAT0019630 | pma-miR-4597 | 3 | _...... | 8 | 85 |
| MIMAT0019019 | hsa-miR-4485-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018964 | hsa-miR-4445-3p | 6 | _...... | 1 | 85 |
| MIMAT0015054 | hsa-miR-3177-3p | 8 | _...... | 3 | 85 |
| MIMAT0013964 | bhv1-miR-B3 | 7 | _...... | 2 | 85 |
| MIMAT0007124 | oan-miR-1382 | 1 | _...... | 6 | 85 |
| MIMAT0003395 | dre-miR-15a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020312 | cel-miR-53-3p | 6 | _...... | 1 | 85 |
