| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gggatgag | 8 | ||
| MIMAT0025305 | prv-miR-LLT2 | 8 | ........ | 1 | 100 |
| MIMAT0033654 | sma-miR-8467-3p | 2 | ......._ | 8 | 87 |
| MIMAT0029050 | gga-miR-7448-5p | 7 | _....... | 1 | 87 |
| MIMAT0029045 | gga-miR-7445-3p | 1 | _....... | 7 | 87 |
| MIMAT0027641 | hsa-miR-6870-3p | 8 | _....... | 2 | 87 |
| MIMAT0027360 | hsa-miR-6729-3p | 7 | ......._ | 1 | 87 |
| MIMAT0024320 | mml-miR-1255a-5p | 2 | _....... | 8 | 87 |
| MIMAT0024176 | ggo-miR-1255a | 2 | _....... | 8 | 87 |
| MIMAT0022037 | aca-miR-5417 | 7 | ......._ | 1 | 87 |
| MIMAT0021117 | hsa-miR-5187-5p | 2 | ......._ | 8 | 87 |
| MIMAT0020198 | dme-miR-4971-5p | 1 | _....... | 7 | 87 |
| MIMAT0016181 | ppy-miR-1255b | 1 | _....... | 7 | 87 |
| MIMAT0016180 | ppy-miR-1255a | 2 | _....... | 8 | 87 |
| MIMAT0012876 | hvt-miR-H11 | 1 | ......._ | 7 | 87 |
| MIMAT0012417 | dps-miR-2573-3p | 8 | _....... | 2 | 87 |
| MIMAT0011982 | bta-miR-2418 | 2 | ......._ | 8 | 87 |
| MIMAT0007980 | ptr-miR-1255b | 2 | _....... | 8 | 87 |
| MIMAT0005945 | hsa-miR-1255b-5p | 2 | _....... | 8 | 87 |
| MIMAT0005906 | hsa-miR-1255a | 2 | _....... | 8 | 87 |
| MIMAT0036596 | tch-miR-324-5p | 8 | ......c. | 1 | 87 |
| MIMAT0036135 | chi-miR-324-5p | 8 | ......c. | 1 | 87 |
| MIMAT0030900 | stu-miR1886g-5p | 1 | .a...... | 8 | 87 |
| MIMAT0024130 | ggo-miR-324 | 8 | ......c. | 1 | 87 |
| MIMAT0023909 | cgr-miR-324-5p | 8 | ......c. | 1 | 87 |
| MIMAT0020188 | dme-miR-4965-5p | 1 | .a...... | 8 | 87 |
| MIMAT0015827 | ppy-miR-324-5p | 8 | ......c. | 1 | 87 |
| MIMAT0013957 | ssc-miR-324 | 8 | ......c. | 1 | 87 |
| MIMAT0013033 | eca-miR-324-5p | 8 | ......c. | 1 | 87 |
| MIMAT0009896 | cfa-miR-324 | 8 | ......c. | 1 | 87 |
| MIMAT0009285 | bta-miR-324 | 8 | ......c. | 1 | 87 |
| MIMAT0006266 | mml-miR-324-5p | 8 | ......c. | 1 | 87 |
| MIMAT0000761 | hsa-miR-324-5p | 8 | ......c. | 1 | 87 |
| MIMAT0000555 | mmu-miR-324-5p | 8 | ......c. | 1 | 87 |
| MIMAT0000553 | rno-miR-324-5p | 8 | ......c. | 1 | 87 |
| MIMAT0037282 | ame-miR-9878 | 2 | ......__ | 7 | 75 |
| MIMAT0037280 | ame-miR-9876 | 2 | ......__ | 7 | 75 |
| MIMAT0037279 | ame-miR-9875 | 3 | ......__ | 8 | 75 |
| MIMAT0037188 | ata-miR408-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036491 | tch-miR-188-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036395 | gma-miR9760 | 2 | _......_ | 7 | 75 |
| MIMAT0036013 | chi-miR-188-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035443 | sly-miR166c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035422 | nve-miR-9461 | 3 | _......_ | 8 | 75 |
| MIMAT0035151 | efu-miR-188 | 6 | ......__ | 1 | 75 |
| MIMAT0034492 | eca-miR-8958 | 1 | _......_ | 6 | 75 |
| MIMAT0034211 | gra-miR8773 | 3 | _......_ | 8 | 75 |
| MIMAT0034073 | gra-miR8693 | 2 | _......_ | 7 | 75 |
| MIMAT0033819 | pxy-miR-279b-5p | 1 | __...... | 6 | 75 |
| MIMAT0033155 | ppc-miR-8312-3p | 6 | _......_ | 1 | 75 |
| MIMAT0031708 | bbe-miR-4891-5p | 3 | __...... | 8 | 75 |
| MIMAT0031408 | mmu-miR-8104 | 3 | _......_ | 8 | 75 |
| MIMAT0031236 | stu-miR5304-3p | 2 | __...... | 7 | 75 |
| MIMAT0030566 | prd-miR-37-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032252 | rgl-miR7803b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0029942 | cbn-miR-7690 | 8 | _......_ | 3 | 75 |
| MIMAT0028811 | mdo-miR-7377-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028616 | mdo-miR-7309-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028604 | mdo-miR-7305-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028352 | mml-miR-7196-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028251 | mml-miR-1245-3p | 1 | __...... | 6 | 75 |
| MIMAT0028193 | dev-miR-D18-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026100 | cme-miR854 | 1 | __...... | 6 | 75 |
| MIMAT0026066 | mdm-miR171o | 2 | ......__ | 7 | 75 |
| MIMAT0028092 | mmu-miR-7093-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027944 | mmu-miR-7020-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027820 | mmu-miR-6960-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027683 | hsa-miR-6891-3p | 8 | __...... | 3 | 75 |
| MIMAT0027414 | hsa-miR-6757-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027389 | hsa-miR-6744-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027357 | hsa-miR-6728-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025597 | gga-miR-6547-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025189 | ptc-miR6463 | 2 | _......_ | 7 | 75 |
| MIMAT0032135 | sma-miR-2d-5p | 7 | _......_ | 2 | 75 |
| MIMAT0024593 | bta-miR-6121-3p | 3 | _......_ | 8 | 75 |
| MIMAT0024369 | ppy-miR-1193 | 1 | ......__ | 6 | 75 |
| MIMAT0024277 | ggo-miR-188 | 6 | ......__ | 1 | 75 |
| MIMAT0024256 | ggo-miR-1193 | 1 | ......__ | 6 | 75 |
| MIMAT0024236 | ggo-miR-3605 | 1 | __...... | 6 | 75 |
| MIMAT0023897 | cgr-miR-30b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0023816 | cgr-miR-188 | 6 | ......__ | 1 | 75 |
| MIMAT0023697 | hsa-miR-6072 | 8 | __...... | 3 | 75 |
| MIMAT0023489 | hco-miR-5979 | 2 | _......_ | 7 | 75 |
| MIMAT0022099 | aca-miR-5466 | 2 | _......_ | 7 | 75 |
| MIMAT0021129 | hsa-miR-5196-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020610 | mmu-miR-5103 | 6 | _......_ | 1 | 75 |
| MIMAT0020550 | bdi-miR408-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020480 | bfl-miR-4891-5p | 3 | __...... | 8 | 75 |
| MIMAT0019269 | oar-miR-1193-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018504 | ath-miR854e | 1 | __...... | 6 | 75 |
| MIMAT0017920 | aly-miR3444b | 8 | __...... | 3 | 75 |
| MIMAT0016278 | sja-miR-2d-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016054 | ppy-miR-613 | 2 | ......__ | 7 | 75 |
| MIMAT0016002 | ppy-miR-556-5p | 1 | __...... | 6 | 75 |
| MIMAT0015405 | bmo-miR-3224 | 6 | _......_ | 1 | 75 |
| MIMAT0015401 | bmo-miR-3221 | 7 | __...... | 2 | 75 |
| MIMAT0015049 | hsa-miR-1193 | 1 | ......__ | 6 | 75 |
| MIMAT0014484 | tgu-miR-2974 | 3 | ......__ | 8 | 75 |
| MIMAT0014474 | tgu-miR-2954-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014621 | tgu-miR-2962-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014448 | gga-miR-2954 | 6 | ......__ | 1 | 75 |
| MIMAT0013198 | eca-miR-188-5p | 6 | ......__ | 1 | 75 |
| MIMAT0013750 | bmo-miR-2836 | 6 | ......__ | 1 | 75 |
| MIMAT0013606 | bmo-miR-279d-5p | 1 | __...... | 6 | 75 |
| MIMAT0013475 | mtr-miR2668 | 7 | _......_ | 2 | 75 |
| MIMAT0012300 | dps-miR-2515 | 2 | __...... | 7 | 75 |
| MIMAT0011625 | crm-miR-2228 | 6 | _......_ | 1 | 75 |
| MIMAT0009880 | cfa-miR-188 | 6 | ......__ | 1 | 75 |
| MIMAT0017341 | mmu-miR-1934-3p | 2 | _......_ | 7 | 75 |
| MIMAT0009249 | bta-miR-188 | 6 | ......__ | 1 | 75 |
| MIMAT0032063 | dvi-miR-278-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032042 | dvi-miR-2a-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0019096 | tca-miR-2b-5p | 7 | __...... | 2 | 75 |
| MIMAT0019094 | tca-miR-2a-5p | 6 | __...... | 1 | 75 |
| MIMAT0007821 | osa-miR812f | 3 | _......_ | 8 | 75 |
| MIMAT0007644 | gga-miR-1740-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009181 | oan-miR-1421l-2-3p | 8 | ......__ | 3 | 75 |
| MIMAT0007206 | oan-miR-1400-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007116 | oan-miR-1380-5p | 7 | ......__ | 2 | 75 |
| MIMAT0009168 | oan-miR-1421n-2-3p | 8 | ......__ | 3 | 75 |
| MIMAT0007085 | oan-miR-1421s-3p | 8 | ......__ | 3 | 75 |
| MIMAT0007081 | oan-miR-1421q-3p | 8 | ......__ | 3 | 75 |
| MIMAT0007036 | oan-miR-1371 | 3 | __...... | 8 | 75 |
| MIMAT0005301 | rno-miR-188-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005209 | ppt-miR1077-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004357 | ppt-miR414 | 6 | _......_ | 1 | 75 |
| MIMAT0004283 | ath-miR854d | 1 | __...... | 6 | 75 |
| MIMAT0004282 | ath-miR854c | 1 | __...... | 6 | 75 |
| MIMAT0004281 | ath-miR854b | 1 | __...... | 6 | 75 |
| MIMAT0004280 | ath-miR854a | 1 | __...... | 6 | 75 |
| MIMAT0003343 | hcmv-miR-UL70-3p | 2 | ......__ | 7 | 75 |
| MIMAT0003220 | hsa-miR-556-5p | 1 | __...... | 6 | 75 |
| MIMAT0002311 | ppa-miR-188 | 6 | ......__ | 1 | 75 |
| MIMAT0002310 | mne-miR-188 | 6 | ......__ | 1 | 75 |
| MIMAT0002309 | ppy-miR-188 | 6 | ......__ | 1 | 75 |
| MIMAT0002308 | ptr-miR-188 | 6 | ......__ | 1 | 75 |
| MIMAT0002307 | mml-miR-188-5p | 6 | ......__ | 1 | 75 |
| MIMAT0001636 | hsa-miR-452-3p | 6 | __...... | 1 | 75 |
| MIMAT0001330 | osa-miR414 | 6 | _......_ | 1 | 75 |
| MIMAT0022884 | osa-miR408-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004721 | rno-miR-30b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000457 | hsa-miR-188-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020805 | dme-miR-278-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000217 | mmu-miR-188-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004524 | mmu-miR-30b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020781 | dme-miR-2a-2-5p | 7 | __...... | 2 | 75 |
