| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagatgcc | 8 | ||
| MIMAT0030226 | bdi-miR7743-5p | 8 | ......._ | 2 | 87 |
| MIMAT0027352 | cln-miR6725 | 8 | _....... | 2 | 87 |
| MIMAT0017575 | aly-miR399c-5p | 8 | _....... | 2 | 87 |
| MIMAT0012282 | dps-miR-3983 | 1 | _....... | 7 | 87 |
| MIMAT0004468 | mdv2-miR-M24-3p | 2 | ......._ | 8 | 87 |
| MIMAT0012540 | mdv2-miR-M16-3p | 1 | _....... | 7 | 87 |
| MIMAT0003457 | mmu-miR-680 | 8 | _....... | 2 | 87 |
| MIMAT0031913 | ath-miR399c-5p | 8 | _....... | 2 | 87 |
| MIMAT0022141 | osa-miR5508 | 1 | ......g. | 8 | 87 |
| MIMAT0016960 | rlcv-miR-rL1-34-5p | 1 | ......g. | 8 | 87 |
| MIMAT0015324 | zma-miR169m-3p | 8 | .g...... | 1 | 87 |
| MIMAT0013260 | mtr-miR2589 | 8 | .g...... | 1 | 87 |
| MIMAT0037222 | ata-miR172c-5p | 8 | __...... | 3 | 75 |
| MIMAT0036547 | tch-miR-9771h | 1 | _......_ | 6 | 75 |
| MIMAT0036291 | chi-miR-708-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035023 | efu-miR-9318b | 8 | __...... | 3 | 75 |
| MIMAT0034882 | efu-miR-9262 | 1 | __...... | 6 | 75 |
| MIMAT0033360 | str-miR-8370-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031516 | ppe-miR827 | 2 | ......__ | 7 | 75 |
| MIMAT0031288 | stu-miR172c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0031273 | stu-miR827-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030214 | bdi-miR7739-5p | 1 | _......_ | 6 | 75 |
| MIMAT0029302 | mes-miR827 | 2 | ......__ | 7 | 75 |
| MIMAT0029113 | gga-miR-7479-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028632 | mdo-miR-7316-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028156 | ssc-miR-7140-3p | 3 | __...... | 8 | 75 |
| MIMAT0026372 | bma-miR-5873 | 1 | ......__ | 6 | 75 |
| MIMAT0026028 | mdm-miR827 | 2 | ......__ | 7 | 75 |
| MIMAT0025082 | mmu-miR-6339 | 1 | __...... | 6 | 75 |
| MIMAT0024725 | nta-miR827 | 2 | ......__ | 7 | 75 |
| MIMAT0023478 | hco-miR-5971 | 2 | ......__ | 7 | 75 |
| MIMAT0021385 | isc-miR-5314 | 3 | ......__ | 8 | 75 |
| MIMAT0020279 | ssp-miR827 | 2 | ......__ | 7 | 75 |
| MIMAT0027081 | bdi-miR5173-3p | 7 | _......_ | 2 | 75 |
| MIMAT0020703 | bdi-miR827-3p | 2 | ......__ | 7 | 75 |
| MIMAT0020449 | tcc-miR827 | 2 | ......__ | 7 | 75 |
| MIMAT0019809 | hsa-miR-4708-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019702 | hsa-miR-4642 | 8 | __...... | 3 | 75 |
| MIMAT0018485 | csi-miR827 | 2 | ......__ | 7 | 75 |
| MIMAT0018141 | pab-miR3709a | 3 | _......_ | 8 | 75 |
| MIMAT0016804 | cin-miR-4186-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016735 | cin-miR-4138-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017902 | rno-miR-741-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017610 | aly-miR828-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017608 | aly-miR827-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017521 | aly-miR172a-5p | 8 | __...... | 3 | 75 |
| MIMAT0015622 | bmo-miR-3415 | 1 | __...... | 6 | 75 |
| MIMAT0014900 | mmu-miR-3089-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014343 | ghr-miR827c | 2 | ......__ | 7 | 75 |
| MIMAT0014342 | ghr-miR827b | 2 | ......__ | 7 | 75 |
| MIMAT0014341 | ghr-miR827a | 2 | ......__ | 7 | 75 |
| MIMAT0019186 | rlcv-miR-rL1-18-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014031 | zma-miR827-3p | 2 | ......__ | 7 | 75 |
| MIMAT0012341 | dps-miR-2542-3p | 1 | ......__ | 6 | 75 |
| MIMAT0012287 | dps-miR-2503 | 3 | __...... | 8 | 75 |
| MIMAT0009981 | osa-miR827 | 2 | ......__ | 7 | 75 |
| MIMAT0017351 | mmu-miR-1981-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007545 | gga-miR-1663-3p | 7 | __...... | 2 | 75 |
| MIMAT0007418 | gga-miR-1560-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006003 | ptc-miR827 | 2 | ......__ | 7 | 75 |
| MIMAT0007036 | oan-miR-1371 | 1 | ......__ | 6 | 75 |
| MIMAT0006861 | oan-miR-1339-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004243 | ath-miR827 | 2 | ......__ | 7 | 75 |
| MIMAT0026645 | gga-miR-456-5p | 8 | __...... | 3 | 75 |
| MIMAT0022918 | ptc-miR477a-3p | 2 | __...... | 7 | 75 |
