| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgaaatc | 8 | ||
| MIMAT0005981 | mdv1-miR-M10-3p | 1 | ........ | 8 | 100 |
| MIMAT0032975 | ppc-miR-8253-3p | 1 | ......._ | 7 | 87 |
| MIMAT0031552 | ppe-miR6274b-5p | 7 | ......._ | 1 | 87 |
| MIMAT0030164 | bdi-miR7720-5p | 1 | ......._ | 7 | 87 |
| MIMAT0029598 | cbr-miR-7592 | 2 | ......._ | 8 | 87 |
| MIMAT0019518 | pma-miR-205a-3p | 8 | _....... | 2 | 87 |
| MIMAT0037069 | ssc-miR-9850-5p | 1 | .g...... | 8 | 87 |
| MIMAT0030701 | prd-miR-7926-3p | 1 | .t...... | 8 | 87 |
| MIMAT0029546 | ipu-miR-3618 | 8 | .g...... | 1 | 87 |
| MIMAT0025165 | mmu-miR-6412 | 1 | ......c. | 8 | 87 |
| MIMAT0022323 | cin-miR-5600-5p | 1 | ......c. | 8 | 87 |
| MIMAT0004227 | cel-miR-792-3p | 1 | .t...... | 8 | 87 |
| MIMAT0037266 | ame-miR-9864 | 6 | ......__ | 1 | 75 |
| MIMAT0036942 | oha-miR-551b-5p | 1 | __...... | 6 | 75 |
| MIMAT0036818 | oha-miR-205b-3p | 8 | __...... | 3 | 75 |
| MIMAT0036816 | oha-miR-205a-3p | 6 | __...... | 1 | 75 |
| MIMAT0036298 | chi-miR-876-5p | 8 | __...... | 3 | 75 |
| MIMAT0035597 | dvi-miR-981-5p | 8 | __...... | 3 | 75 |
| MIMAT0035577 | dvi-miR-956-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035439 | sly-miR9470-5p | 2 | __...... | 7 | 75 |
| MIMAT0035072 | efu-miR-9330 | 6 | __...... | 1 | 75 |
| MIMAT0033823 | atr-miR8552a | 1 | _......_ | 6 | 75 |
| MIMAT0033778 | pxy-miR-8532-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033701 | pxy-miR-8493 | 3 | _......_ | 8 | 75 |
| MIMAT0033646 | sma-miR-8463-3p | 7 | __...... | 2 | 75 |
| MIMAT0033138 | ppc-miR-8364o-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032499 | ssa-miR-205b-4-3p | 6 | __...... | 1 | 75 |
| MIMAT0032498 | ssa-miR-205b-3-3p | 6 | __...... | 1 | 75 |
| MIMAT0032497 | ssa-miR-205b-2-3p | 6 | __...... | 1 | 75 |
| MIMAT0032496 | ssa-miR-205b-1-3p | 6 | __...... | 1 | 75 |
| MIMAT0031204 | stu-miR7984d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030893 | stu-miR8003 | 6 | _......_ | 1 | 75 |
| MIMAT0029351 | lja-miR7528 | 2 | _......_ | 7 | 75 |
| MIMAT0028626 | mdo-miR-7313-5p | 1 | __...... | 6 | 75 |
| MIMAT0028508 | mdo-miR-7269-5p | 2 | __...... | 7 | 75 |
| MIMAT0031023 | mdo-miR-29a-2-5p | 8 | __...... | 3 | 75 |
| MIMAT0022574 | ola-miR-205 | 7 | __...... | 2 | 75 |
| MIMAT0022114 | pti-miR5481 | 6 | __...... | 1 | 75 |
| MIMAT0021911 | aca-miR-29a-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0021650 | gma-miR169j-3p | 6 | ......__ | 1 | 75 |
| MIMAT0021145 | mtr-miR5212-5p | 8 | __...... | 3 | 75 |
| MIMAT0020132 | cel-miR-4925 | 6 | ......__ | 1 | 75 |
| MIMAT0020132 | cel-miR-4925 | 3 | ......__ | 8 | 75 |
| MIMAT0020486 | bfl-miR-4895 | 3 | _......_ | 8 | 75 |
| MIMAT0020085 | bfl-miR-4858-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019618 | pma-miR-4585 | 6 | ......__ | 1 | 75 |
| MIMAT0018834 | tca-miR-3871-5p | 6 | __...... | 1 | 75 |
| MIMAT0018527 | ame-miR-3756 | 8 | __...... | 3 | 75 |
| MIMAT0018054 | vvi-miR3640-3p | 2 | ......__ | 7 | 75 |
| MIMAT0018048 | vvi-miR3637-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016781 | cin-miR-4173-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017821 | rno-miR-3556a | 7 | __...... | 2 | 75 |
| MIMAT0016302 | sja-miR-3493 | 8 | __...... | 3 | 75 |
| MIMAT0016115 | ppy-miR-876-5p | 8 | __...... | 3 | 75 |
| MIMAT0015042 | hsa-miR-3167 | 8 | __...... | 3 | 75 |
| MIMAT0014638 | tgu-miR-551-5p | 1 | __...... | 6 | 75 |
| MIMAT0014427 | cqu-miR-1890 | 2 | __...... | 7 | 75 |
| MIMAT0015370 | aae-miR-315-3p | 7 | ......__ | 2 | 75 |
| MIMAT0014247 | aae-miR-1890 | 2 | __...... | 7 | 75 |
| MIMAT0014137 | ath-miR2933b | 1 | __...... | 6 | 75 |
| MIMAT0014136 | ath-miR2933a | 1 | __...... | 6 | 75 |
| MIMAT0013785 | bmo-miR-2852 | 8 | __...... | 3 | 75 |
| MIMAT0013121 | eca-miR-876-5p | 8 | __...... | 3 | 75 |
| MIMAT0012843 | rno-miR-876 | 8 | __...... | 3 | 75 |
| MIMAT0026947 | mdo-miR-551b-5p | 1 | __...... | 6 | 75 |
| MIMAT0013472 | mtr-miR2665 | 7 | __...... | 2 | 75 |
| MIMAT0012191 | bdi-miR1135 | 6 | ......__ | 1 | 75 |
| MIMAT0011730 | ppc-miR-2273 | 3 | ......__ | 8 | 75 |
| MIMAT0011275 | sme-miR-2174 | 6 | _......_ | 1 | 75 |
| MIMAT0009932 | cfa-miR-876 | 8 | __...... | 3 | 75 |
| MIMAT0009728 | lgi-miR-1986 | 8 | __...... | 3 | 75 |
| MIMAT0009717 | hru-miR-1986 | 8 | __...... | 3 | 75 |
| MIMAT0009380 | bta-miR-876 | 8 | __...... | 3 | 75 |
| MIMAT0007861 | aga-miR-1890 | 2 | __...... | 7 | 75 |
| MIMAT0006519 | mml-miR-876-5p | 8 | __...... | 3 | 75 |
| MIMAT0026898 | mml-miR-551b-5p | 1 | __...... | 6 | 75 |
| MIMAT0026804 | mml-miR-29c-5p | 8 | __...... | 3 | 75 |
| MIMAT0007660 | gga-miR-1753 | 3 | __...... | 8 | 75 |
| MIMAT0026767 | mdo-miR-340-3p | 2 | __...... | 7 | 75 |
| MIMAT0007289 | gga-miR-551-5p | 1 | __...... | 6 | 75 |
| MIMAT0007129 | oan-miR-551-5p | 1 | __...... | 6 | 75 |
| MIMAT0006884 | oan-miR-1422h-3p | 1 | __...... | 6 | 75 |
| MIMAT0006867 | oan-miR-205-3p | 6 | __...... | 1 | 75 |
| MIMAT0017335 | rno-miR-551b-5p | 1 | __...... | 6 | 75 |
| MIMAT0005159 | ppt-miR1046-5p | 8 | __...... | 3 | 75 |
| MIMAT0005469 | dme-miR-956-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004924 | hsa-miR-876-5p | 8 | __...... | 3 | 75 |
| MIMAT0004854 | mmu-miR-876-5p | 8 | __...... | 3 | 75 |
| MIMAT0026704 | mdo-miR-29a-1-5p | 8 | __...... | 3 | 75 |
| MIMAT0015223 | bmo-miR-7-3p | 3 | __...... | 8 | 75 |
| MIMAT0017236 | mmu-miR-551b-5p | 1 | __...... | 6 | 75 |
| MIMAT0004794 | hsa-miR-551b-5p | 1 | __...... | 6 | 75 |
| MIMAT0026576 | mml-miR-29a-5p | 8 | __...... | 3 | 75 |
| MIMAT0031925 | dre-miR-205-3p | 6 | __...... | 1 | 75 |
| MIMAT0026544 | gga-miR-29c-5p | 8 | __...... | 3 | 75 |
| MIMAT0026487 | gga-miR-29a-5p | 8 | __...... | 3 | 75 |
| MIMAT0020841 | dme-miR-315-3p | 7 | ......__ | 2 | 75 |
| MIMAT0009197 | hsa-miR-205-3p | 6 | __...... | 1 | 75 |
| MIMAT0017003 | mmu-miR-205-3p | 6 | __...... | 1 | 75 |
| MIMAT0020317 | cel-miR-70-5p | 1 | _......_ | 6 | 75 |
