| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgagatc | 8 | ||
| MIMAT0003928 | mdv1-miR-M7-3p | 1 | ........ | 8 | 100 |
| MIMAT0033105 | ppc-miR-8296-5p | 1 | ......._ | 7 | 87 |
| MIMAT0030929 | stu-miR8027 | 7 | ......._ | 1 | 87 |
| MIMAT0030452 | prd-miR-7865-5p | 1 | _....... | 7 | 87 |
| MIMAT0021113 | osa-miR5160 | 1 | _....... | 7 | 87 |
| MIMAT0034632 | eca-miR-9087 | 1 | .t...... | 8 | 87 |
| MIMAT0025354 | pde-miR3704b | 8 | ......c. | 1 | 87 |
| MIMAT0019768 | hsa-miR-4683 | 1 | .g...... | 8 | 87 |
| MIMAT0014832 | mmu-miR-3063-5p | 1 | .g...... | 8 | 87 |
| MIMAT0005387 | cre-miR1148.2 | 1 | .g...... | 8 | 87 |
| MIMAT0036481 | tch-miR-6529 | 3 | __...... | 8 | 75 |
| MIMAT0036453 | ppy-miR-516a | 7 | ......__ | 2 | 75 |
| MIMAT0036443 | ggo-miR-516a | 7 | ......__ | 2 | 75 |
| MIMAT0036441 | ggo-miR-516a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035763 | tae-miR9656-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035650 | dvi-miR-986-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035649 | dvi-miR-977-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035634 | dvi-miR-9547-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035619 | dvi-miR-9538-3p | 3 | __...... | 8 | 75 |
| MIMAT0035577 | dvi-miR-956-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035291 | gsa-bantam-3p | 2 | __...... | 7 | 75 |
| MIMAT0035084 | efu-miR-9335 | 2 | __...... | 7 | 75 |
| MIMAT0034541 | eca-miR-9001 | 1 | __...... | 6 | 75 |
| MIMAT0034541 | eca-miR-9001 | 8 | __...... | 3 | 75 |
| MIMAT0033726 | pxy-bantam | 2 | __...... | 7 | 75 |
| MIMAT0033465 | str-miR-58-3p | 2 | __...... | 7 | 75 |
| MIMAT0033345 | str-miR-81c-3p | 2 | __...... | 7 | 75 |
| MIMAT0033343 | str-miR-81b-3p | 2 | __...... | 7 | 75 |
| MIMAT0033332 | str-miR-81a-3p | 2 | __...... | 7 | 75 |
| MIMAT0033314 | str-bantam-3p | 2 | __...... | 7 | 75 |
| MIMAT0033060 | ppc-miR-8364q-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032939 | ppc-miR-8241-3p | 7 | __...... | 2 | 75 |
| MIMAT0032845 | cel-miR-8212-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031704 | bbe-miR-4887-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030689 | prd-miR-81-3p | 2 | __...... | 7 | 75 |
| MIMAT0030658 | prd-miR-7914-5p | 7 | __...... | 2 | 75 |
| MIMAT0030561 | prd-miR-58-3p | 2 | __...... | 7 | 75 |
| MIMAT0032242 | rgl-miR7801 | 3 | _......_ | 8 | 75 |
| MIMAT0030313 | bdi-miR7779-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030295 | bdi-miR7772-3p | 7 | __...... | 2 | 75 |
| MIMAT0030199 | bdi-miR7732-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029994 | mtr-miR7697-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029782 | hsa-miR-7641 | 8 | __...... | 3 | 75 |
| MIMAT0029695 | cbn-miR-58b | 2 | __...... | 7 | 75 |
| MIMAT0029694 | cbn-miR-82 | 2 | __...... | 7 | 75 |
| MIMAT0029693 | cbn-miR-58a | 2 | __...... | 7 | 75 |
| MIMAT0029692 | cbn-miR-81 | 2 | __...... | 7 | 75 |
| MIMAT0029691 | cbn-miR-80 | 2 | __...... | 7 | 75 |
| MIMAT0029638 | crm-miR-58d | 2 | __...... | 7 | 75 |
| MIMAT0029637 | crm-miR-58c | 2 | __...... | 7 | 75 |
| MIMAT0029365 | lja-miR7539 | 1 | ......__ | 6 | 75 |
| MIMAT0028415 | mmu-miR-7223-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028314 | mml-miR-6529-5p | 3 | __...... | 8 | 75 |
| MIMAT0028276 | mml-miR-7171-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027815 | mmu-miR-6957-3p | 8 | __...... | 3 | 75 |
| MIMAT0025565 | bta-miR-6529a | 3 | __...... | 8 | 75 |
| MIMAT0024930 | hme-bantam | 2 | __...... | 7 | 75 |
| MIMAT0024837 | hvu-miR6209 | 2 | __...... | 7 | 75 |
| MIMAT0024452 | mse-bantam | 2 | __...... | 7 | 75 |
| MIMAT0023488 | hco-miR-5978 | 2 | ......__ | 7 | 75 |
| MIMAT0023484 | hco-miR-5885c | 2 | __...... | 7 | 75 |
| MIMAT0023417 | hco-miR-5885b | 2 | __...... | 7 | 75 |
| MIMAT0023319 | hco-miR-5885a | 2 | __...... | 7 | 75 |
| MIMAT0021586 | asu-miR-5362-5p | 8 | _......_ | 3 | 75 |
| MIMAT0021474 | asu-miR-81a | 2 | __...... | 7 | 75 |
| MIMAT0021422 | asu-miR-81c-3p | 2 | __...... | 7 | 75 |
| MIMAT0021420 | asu-miR-81b-3p | 2 | __...... | 7 | 75 |
| MIMAT0021397 | rmi-miR-5324 | 2 | ......__ | 7 | 75 |
| MIMAT0020474 | bfl-miR-4887 | 7 | ......__ | 2 | 75 |
| MIMAT0019789 | hsa-miR-4695-3p | 7 | __...... | 2 | 75 |
| MIMAT0018260 | gma-miR4364a | 3 | _......_ | 8 | 75 |
| MIMAT0018902 | tca-miR-3899-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018894 | tca-miR-3896-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018755 | tca-miR-3850-3p | 2 | ......__ | 7 | 75 |
| MIMAT0018516 | ame-miR-3747b | 3 | _......_ | 8 | 75 |
| MIMAT0016309 | sja-miR-3500 | 3 | __...... | 8 | 75 |
| MIMAT0015945 | ppy-miR-516a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0015696 | nvi-bantam | 2 | __...... | 7 | 75 |
| MIMAT0015642 | mmu-miR-3471 | 2 | __...... | 7 | 75 |
| MIMAT0017606 | aly-miR825-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015482 | bmo-miR-3295 | 3 | ......__ | 8 | 75 |
| MIMAT0015410 | bmo-miR-3228 | 1 | __...... | 6 | 75 |
| MIMAT0014791 | api-miR-3050 | 2 | __...... | 7 | 75 |
| MIMAT0014421 | cqu-bantam-3p | 2 | __...... | 7 | 75 |
| MIMAT0014219 | aae-bantam-3p | 2 | __...... | 7 | 75 |
| MIMAT0014130 | api-bantam | 2 | __...... | 7 | 75 |
| MIMAT0014093 | bma-bantam | 2 | __...... | 7 | 75 |
| MIMAT0013634 | bmo-miR-2761-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012679 | isc-bantam | 2 | __...... | 7 | 75 |
| MIMAT0012634 | dpu-bantam | 2 | __...... | 7 | 75 |
| MIMAT0012431 | dsi-miR-986-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012292 | dps-miR-2508 | 8 | __...... | 3 | 75 |
| MIMAT0012279 | dps-miR-986-5p | 6 | ......__ | 1 | 75 |
| MIMAT0011740 | osa-miR2118a | 7 | ......__ | 2 | 75 |
| MIMAT0011730 | ppc-miR-2273 | 6 | ......__ | 1 | 75 |
| MIMAT0011715 | ppc-miR-2250 | 2 | __...... | 7 | 75 |
| MIMAT0011656 | ppc-miR-81 | 2 | __...... | 7 | 75 |
| MIMAT0011621 | crm-miR-80-3p | 2 | __...... | 7 | 75 |
| MIMAT0011615 | crm-miR-58b-3p | 2 | __...... | 7 | 75 |
| MIMAT0011570 | crm-miR-81-3p | 2 | __...... | 7 | 75 |
| MIMAT0011539 | crm-miR-82 | 2 | __...... | 7 | 75 |
| MIMAT0011482 | cbr-miR-58b | 2 | __...... | 7 | 75 |
| MIMAT0011432 | cel-miR-2209a-3p | 2 | __...... | 7 | 75 |
| MIMAT0012169 | sme-miR-753e-3p | 2 | __...... | 7 | 75 |
| MIMAT0011226 | sme-miR-753b-3p | 2 | __...... | 7 | 75 |
| MIMAT0010182 | sma-bantam-3p | 2 | __...... | 7 | 75 |
| MIMAT0010177 | sja-bantam | 2 | __...... | 7 | 75 |
| MIMAT0010091 | tca-bantam-3p | 2 | __...... | 7 | 75 |
| MIMAT0010004 | bfl-miR-2075 | 6 | _......_ | 1 | 75 |
| MIMAT0009551 | cte-bantam | 2 | __...... | 7 | 75 |
| MIMAT0009057 | dya-bantam | 2 | __...... | 7 | 75 |
| MIMAT0008985 | dwi-bantam | 2 | __...... | 7 | 75 |
| MIMAT0008966 | dvi-bantam-3p | 2 | __...... | 7 | 75 |
| MIMAT0008861 | dsi-bantam | 2 | __...... | 7 | 75 |
| MIMAT0008775 | dse-bantam | 2 | __...... | 7 | 75 |
| MIMAT0008721 | dpe-bantam | 2 | __...... | 7 | 75 |
| MIMAT0008634 | dmo-bantam | 2 | __...... | 7 | 75 |
| MIMAT0008559 | dgr-bantam | 2 | __...... | 7 | 75 |
| MIMAT0008533 | der-bantam | 2 | __...... | 7 | 75 |
| MIMAT0008409 | dan-bantam | 2 | __...... | 7 | 75 |
| MIMAT0007907 | bmo-bantam-3p | 2 | __...... | 7 | 75 |
| MIMAT0006776 | cel-miR-58b-3p | 2 | __...... | 7 | 75 |
| MIMAT0006373 | mml-miR-516a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0022719 | hsa-miR-1285-5p | 6 | __...... | 1 | 75 |
| MIMAT0005503 | dme-miR-986-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005469 | dme-miR-956-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004969 | cre-miR919.1 | 3 | ......__ | 8 | 75 |
| MIMAT0004249 | ath-miR831-3p | 7 | __...... | 2 | 75 |
| MIMAT0003951 | sme-bantam-c-3p | 2 | __...... | 7 | 75 |
| MIMAT0003950 | sme-bantam-b-3p | 2 | __...... | 7 | 75 |
| MIMAT0003949 | sme-bantam-a | 2 | __...... | 7 | 75 |
| MIMAT0003927 | mdv1-miR-M6-3p | 1 | __...... | 6 | 75 |
| MIMAT0003465 | mmu-miR-719 | 6 | _......_ | 1 | 75 |
| MIMAT0004770 | hsa-miR-516a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0001494 | aga-bantam | 2 | __...... | 7 | 75 |
| MIMAT0001470 | ame-bantam | 2 | __...... | 7 | 75 |
| MIMAT0001197 | dps-bantam | 2 | __...... | 7 | 75 |
| MIMAT0000489 | cbr-miR-82 | 2 | __...... | 7 | 75 |
| MIMAT0000488 | cbr-miR-81 | 2 | __...... | 7 | 75 |
| MIMAT0000487 | cbr-miR-80 | 2 | __...... | 7 | 75 |
| MIMAT0000478 | cbr-miR-58a | 2 | __...... | 7 | 75 |
| MIMAT0000365 | dme-bantam-3p | 2 | __...... | 7 | 75 |
| MIMAT0015117 | cel-miR-243-5p | 7 | _......_ | 2 | 75 |
| MIMAT0000055 | cel-miR-82-3p | 2 | __...... | 7 | 75 |
| MIMAT0000054 | cel-miR-81-3p | 2 | __...... | 7 | 75 |
| MIMAT0000053 | cel-miR-80-3p | 2 | __...... | 7 | 75 |
| MIMAT0000030 | cel-miR-58a-3p | 2 | __...... | 7 | 75 |
