| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgagcc | 7 | ||
| MIMAT0025866 | blv-miR-B5-3p | 2 | ....... | 8 | 100 |
| MIMAT0007026 | oan-miR-1363-3p | 2 | ....... | 8 | 100 |
| MIMAT0037037 | ssc-miR-9819-5p | 8 | ......_ | 3 | 85 |
| MIMAT0034764 | eca-miR-9183 | 8 | _...... | 3 | 85 |
| MIMAT0032843 | cel-miR-8211-3p | 8 | _...... | 3 | 85 |
| MIMAT0031691 | bbe-miR-4867-3p | 3 | _...... | 8 | 85 |
| MIMAT0031467 | ppe-miR171d-3p | 1 | _...... | 6 | 85 |
| MIMAT0028658 | mdo-miR-7328-5p | 8 | _...... | 3 | 85 |
| MIMAT0028268 | mml-miR-7167-5p | 7 | _...... | 2 | 85 |
| MIMAT0025690 | gga-miR-6596-5p | 3 | _...... | 8 | 85 |
| MIMAT0025314 | prv-miR-LLT10b | 2 | _...... | 7 | 85 |
| MIMAT0025313 | prv-miR-LLT10a | 2 | _...... | 7 | 85 |
| MIMAT0025022 | hsv1-miR-H26 | 7 | _...... | 2 | 85 |
| MIMAT0024345 | mml-miR-2114 | 1 | _...... | 6 | 85 |
| MIMAT0024072 | ptr-miR-2114 | 1 | _...... | 6 | 85 |
| MIMAT0023988 | cgr-miR-615-3p | 3 | _...... | 8 | 85 |
| MIMAT0023234 | gma-miR171s | 1 | _...... | 6 | 85 |
| MIMAT0023229 | gma-miR171r | 1 | _...... | 6 | 85 |
| MIMAT0023132 | mtr-miR171g | 1 | _...... | 6 | 85 |
| MIMAT0021269 | mtr-miR171h | 1 | _...... | 6 | 85 |
| MIMAT0020595 | ssc-miR-615 | 3 | _...... | 8 | 85 |
| MIMAT0020148 | dme-miR-4941-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020103 | bfl-miR-4867 | 3 | _...... | 8 | 85 |
| MIMAT0018455 | csi-miR171b | 1 | _...... | 6 | 85 |
| MIMAT0018864 | tca-miR-980-5p | 7 | _...... | 2 | 85 |
| MIMAT0017808 | rno-miR-3550 | 2 | _...... | 7 | 85 |
| MIMAT0016057 | ppy-miR-615-3p | 3 | _...... | 8 | 85 |
| MIMAT0017741 | ath-miR841b-5p | 3 | _...... | 8 | 85 |
| MIMAT0017646 | aly-miR858-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015446 | bmo-miR-3262 | 7 | _...... | 2 | 85 |
| MIMAT0012977 | eca-miR-615-3p | 3 | _...... | 8 | 85 |
| MIMAT0013583 | cte-miR-2714 | 3 | _...... | 8 | 85 |
| MIMAT0012301 | dps-miR-2518 | 1 | ......_ | 6 | 85 |
| MIMAT0011941 | bta-miR-2388-3p | 6 | ......_ | 1 | 85 |
| MIMAT0011919 | bta-miR-2373-3p | 1 | _...... | 6 | 85 |
| MIMAT0011157 | hsa-miR-2114-3p | 1 | _...... | 6 | 85 |
| MIMAT0009952 | bta-miR-1225-3p | 2 | _...... | 7 | 85 |
| MIMAT0008277 | ptr-miR-615 | 3 | _...... | 8 | 85 |
| MIMAT0006466 | mml-miR-615-3p | 3 | _...... | 8 | 85 |
| MIMAT0007524 | gga-miR-1648-5p | 7 | _...... | 2 | 85 |
| MIMAT0007442 | gga-miR-1581 | 1 | _...... | 6 | 85 |
| MIMAT0007363 | gma-miR171b-3p | 1 | _...... | 6 | 85 |
| MIMAT0005996 | ptc-miR171j | 1 | _...... | 6 | 85 |
| MIMAT0005995 | ptc-miR171m | 1 | _...... | 6 | 85 |
| MIMAT0005994 | ptc-miR171l-3p | 1 | _...... | 6 | 85 |
| MIMAT0007274 | oan-miR-1417-5p | 6 | ......_ | 1 | 85 |
| MIMAT0006943 | oan-miR-1351-5p | 2 | _...... | 7 | 85 |
| MIMAT0004263 | ath-miR841a-5p | 3 | _...... | 8 | 85 |
| MIMAT0003783 | mmu-miR-615-3p | 3 | _...... | 8 | 85 |
| MIMAT0003283 | hsa-miR-615-3p | 3 | _...... | 8 | 85 |
| MIMAT0001421 | mmu-miR-434-5p | 6 | ......_ | 1 | 85 |
