| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgttaa | 7 | ||
| MIMAT0035398 | nve-miR-9437 | 7 | ....... | 1 | 100 |
| MIMAT0018315 | gma-miR4399 | 7 | ....... | 1 | 100 |
| MIMAT0032064 | dvi-miR-13b-5p | 1 | ....... | 7 | 100 |
| MIMAT0004411 | rrv-miR-rR1-4-3p | 2 | ....... | 8 | 100 |
| MIMAT0020796 | dme-miR-13b-1-5p | 1 | ....... | 7 | 100 |
| MIMAT0034243 | gra-miR8762c | 6 | _...... | 1 | 85 |
| MIMAT0034194 | gra-miR8762b | 6 | _...... | 1 | 85 |
| MIMAT0034193 | gra-miR7502e | 6 | _...... | 1 | 85 |
| MIMAT0033633 | sma-miR-8459-5p | 6 | ......_ | 1 | 85 |
| MIMAT0033472 | str-miR-87b-5p | 1 | _...... | 6 | 85 |
| MIMAT0033400 | str-miR-8377-5p | 7 | _...... | 2 | 85 |
| MIMAT0030844 | prd-miR-7971-5p | 3 | _...... | 8 | 85 |
| MIMAT0028158 | ssc-miR-7141-3p | 8 | _...... | 3 | 85 |
| MIMAT0026342 | bma-miR-5844 | 6 | ......_ | 1 | 85 |
| MIMAT0023436 | hco-miR-5941 | 6 | ......_ | 1 | 85 |
| MIMAT0023137 | mtr-miR5755 | 8 | _...... | 3 | 85 |
| MIMAT0016724 | cin-miR-4129-3p | 3 | _...... | 8 | 85 |
| MIMAT0016466 | cin-miR-4003c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015532 | bmo-miR-3345 | 3 | ......_ | 8 | 85 |
| MIMAT0014758 | api-miR-3022 | 3 | ......_ | 8 | 85 |
| MIMAT0001005 | ath-miR404 | 7 | _...... | 2 | 85 |
