| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tctgggc | 7 | ||
| MIMAT0031766 | hbv-miR-B7-5p | 2 | ....... | 8 | 100 |
| MIMAT0022357 | mmu-miR-1231-5p | 1 | ....... | 7 | 100 |
| MIMAT0021120 | hsa-miR-5189-5p | 1 | ....... | 7 | 100 |
| MIMAT0019309 | oar-miR-134-3p | 1 | ....... | 7 | 100 |
| MIMAT0018124 | pab-miR950-3p | 1 | ....... | 7 | 100 |
| MIMAT0016208 | ppy-miR-1285b | 1 | ....... | 7 | 100 |
| MIMAT0012631 | bmo-miR-2751 | 2 | ....... | 8 | 100 |
| MIMAT0008004 | ptr-miR-1285 | 1 | ....... | 7 | 100 |
| MIMAT0006027 | odi-miR-1476-5p | 1 | ....... | 7 | 100 |
| MIMAT0006026 | odi-miR-1475 | 1 | ....... | 7 | 100 |
| MIMAT0005876 | hsa-miR-1285-3p | 1 | ....... | 7 | 100 |
| MIMAT0036615 | tch-miR-9770 | 1 | ......_ | 6 | 85 |
| MIMAT0036601 | tch-miR-326 | 3 | ......_ | 8 | 85 |
| MIMAT0036143 | chi-miR-330-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036138 | chi-miR-326-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035171 | efu-miR-9360 | 3 | ......_ | 8 | 85 |
| MIMAT0034717 | eca-miR-8908m | 8 | _...... | 3 | 85 |
| MIMAT0034694 | eca-miR-8908k | 8 | ......_ | 3 | 85 |
| MIMAT0034503 | eca-miR-8968 | 1 | ......_ | 6 | 85 |
| MIMAT0034385 | cfa-miR-8883 | 1 | ......_ | 6 | 85 |
| MIMAT0033352 | str-miR-5359-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033011 | ppc-miR-8263-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032998 | ppc-miR-2237d-3p | 8 | _...... | 3 | 85 |
| MIMAT0032891 | ppc-miR-8224-3p | 3 | _...... | 8 | 85 |
| MIMAT0032384 | ssa-miR-150-3p | 1 | _...... | 6 | 85 |
| MIMAT0031413 | mmu-miR-8108 | 1 | ......_ | 6 | 85 |
| MIMAT0030468 | prd-miR-5359-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030467 | prd-miR-86-3p | 1 | _...... | 6 | 85 |
| MIMAT0030458 | prd-miR-7866-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029890 | mmu-miR-7684-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029566 | ipu-miR-7567 | 8 | _...... | 3 | 85 |
| MIMAT0029118 | gga-miR-7482-5p | 2 | _...... | 7 | 85 |
| MIMAT0031033 | mdo-miR-1544e-5p | 8 | _...... | 3 | 85 |
| MIMAT0028527 | mdo-miR-7276-3p | 6 | _...... | 1 | 85 |
| MIMAT0028392 | mmu-miR-7212-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028220 | hsa-miR-7155-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028131 | mmu-miR-7117-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027898 | mmu-miR-6998-5p | 1 | _...... | 6 | 85 |
| MIMAT0027710 | mmu-miR-6905-5p | 2 | _...... | 7 | 85 |
| MIMAT0027622 | hsa-miR-6860 | 2 | _...... | 7 | 85 |
| MIMAT0027583 | hsa-miR-6840-3p | 6 | _...... | 1 | 85 |
| MIMAT0027452 | hsa-miR-6776-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025856 | hsa-miR-6724-5p | 1 | _...... | 6 | 85 |
| MIMAT0025835 | gga-miR-6563-3p | 2 | _...... | 7 | 85 |
| MIMAT0025733 | gga-miR-6637-3p | 2 | _...... | 7 | 85 |
| MIMAT0025552 | bta-miR-6523a | 1 | ......_ | 6 | 85 |
| MIMAT0025331 | pde-miR390 | 8 | _...... | 3 | 85 |
| MIMAT0025099 | mmu-miR-6356 | 8 | ......_ | 3 | 85 |
| MIMAT0025057 | rno-miR-3075 | 3 | ......_ | 8 | 85 |
| MIMAT0027109 | mml-miR-1298-3p | 3 | ......_ | 8 | 85 |
| MIMAT0024230 | ggo-miR-488 | 6 | ......_ | 1 | 85 |
| MIMAT0024215 | ggo-miR-326 | 3 | ......_ | 8 | 85 |
| MIMAT0024042 | ptr-miR-3192 | 1 | ......_ | 6 | 85 |
| MIMAT0023913 | cgr-miR-326 | 3 | ......_ | 8 | 85 |
| MIMAT0023352 | hco-miR-5902-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022293 | hsa-miR-1295b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0021580 | asu-miR-5359-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021511 | asu-miR-279a-5p | 1 | _...... | 6 | 85 |
| MIMAT0021480 | asu-miR-86-3p | 1 | _...... | 6 | 85 |
| MIMAT0020485 | bfl-miR-4894 | 1 | ......_ | 6 | 85 |
| MIMAT0019796 | hsa-miR-4700-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019756 | hsa-miR-4674 | 1 | _...... | 6 | 85 |
| MIMAT0019020 | hsa-miR-4486 | 2 | _...... | 7 | 85 |
| MIMAT0018937 | hsa-miR-378g | 2 | _...... | 7 | 85 |
| MIMAT0017968 | ssc-miR-4335 | 8 | _...... | 3 | 85 |
| MIMAT0016240 | ppy-miR-1912 | 8 | ......_ | 3 | 85 |
| MIMAT0015833 | ppy-miR-330-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015830 | ppy-miR-326 | 3 | ......_ | 8 | 85 |
| MIMAT0015076 | hsa-miR-3192-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019216 | hsa-miR-3187-5p | 2 | _...... | 7 | 85 |
| MIMAT0014858 | mmu-miR-3075-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013954 | ssc-miR-1285 | 1 | _...... | 6 | 85 |
| MIMAT0013201 | eca-miR-1912 | 8 | ......_ | 3 | 85 |
| MIMAT0013012 | eca-miR-330 | 3 | ......_ | 8 | 85 |
| MIMAT0012989 | eca-miR-326 | 3 | ......_ | 8 | 85 |
| MIMAT0012024 | bta-miR-2447 | 1 | ......_ | 6 | 85 |
| MIMAT0012000 | bta-miR-2430 | 1 | ......_ | 6 | 85 |
| MIMAT0011965 | bta-miR-2407 | 1 | _...... | 6 | 85 |
| MIMAT0011891 | bta-miR-2355-5p | 6 | ......_ | 1 | 85 |
| MIMAT0011586 | crm-miR-86-3p | 1 | _...... | 6 | 85 |
| MIMAT0009903 | cfa-miR-488 | 6 | ......_ | 1 | 85 |
| MIMAT0009894 | cfa-miR-326 | 3 | ......_ | 8 | 85 |
| MIMAT0009893 | cfa-miR-330 | 3 | ......_ | 8 | 85 |
| MIMAT0009286 | bta-miR-326 | 3 | ......_ | 8 | 85 |
| MIMAT0008274 | ptr-miR-612 | 2 | _...... | 7 | 85 |
| MIMAT0008099 | ptr-miR-326 | 3 | ......_ | 8 | 85 |
| MIMAT0007887 | hsa-miR-1912 | 8 | ......_ | 3 | 85 |
| MIMAT0007771 | osa-miR1851 | 3 | ......_ | 8 | 85 |
| MIMAT0026882 | mml-miR-488-5p | 6 | ......_ | 1 | 85 |
| MIMAT0006270 | mml-miR-330-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007570 | gga-miR-1683 | 1 | ......_ | 6 | 85 |
| MIMAT0007508 | gga-miR-1635 | 7 | _...... | 2 | 85 |
| MIMAT0007174 | oan-miR-1389-3p | 2 | _...... | 7 | 85 |
| MIMAT0007028 | oan-miR-1365-5p | 3 | _...... | 8 | 85 |
| MIMAT0006934 | oan-miR-1349 | 2 | _...... | 7 | 85 |
| MIMAT0006840 | oan-miR-1338-3p | 3 | _...... | 8 | 85 |
| MIMAT0017320 | rno-miR-488-5p | 6 | ......_ | 1 | 85 |
| MIMAT0005465 | dme-miR-954-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004998 | pta-miR390 | 8 | _...... | 3 | 85 |
| MIMAT0022939 | hsa-miR-939-3p | 3 | _...... | 8 | 85 |
| MIMAT0003449 | mmu-miR-488-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014810 | mmu-miR-1298-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026641 | hsa-miR-1298-3p | 3 | ......_ | 8 | 85 |
| MIMAT0019090 | rlcv-miR-rL1-13-5p | 2 | _...... | 7 | 85 |
| MIMAT0003280 | hsa-miR-612 | 2 | _...... | 7 | 85 |
| MIMAT0002804 | hsa-miR-488-5p | 6 | ......_ | 1 | 85 |
| MIMAT0002140 | ssc-miR-326 | 3 | ......_ | 8 | 85 |
| MIMAT0000756 | hsa-miR-326 | 3 | ......_ | 8 | 85 |
| MIMAT0004693 | hsa-miR-330-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004642 | mmu-miR-330-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004641 | rno-miR-330-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000560 | rno-miR-326-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000559 | mmu-miR-326-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020776 | cel-miR-86-3p | 1 | _...... | 6 | 85 |
