| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgcttgtt | 8 | ||
| MIMAT0035684 | bra-miR408-3p | 1 | ........ | 8 | 100 |
| MIMAT0007504 | gga-miR-1632-5p | 1 | ........ | 8 | 100 |
| MIMAT0003920 | mdv1-miR-M1-5p | 1 | ........ | 8 | 100 |
| MIMAT0036753 | oha-miR-1788-5p | 2 | _....... | 8 | 87 |
| MIMAT0032412 | ssa-miR-1788-5p | 2 | _....... | 8 | 87 |
| MIMAT0030352 | hhi-miR-1788 | 2 | _....... | 8 | 87 |
| MIMAT0029433 | ipu-miR-1788 | 2 | _....... | 8 | 87 |
| MIMAT0025407 | tgu-miR-1788 | 2 | _....... | 8 | 87 |
| MIMAT0021805 | aca-miR-1788-5p | 2 | _....... | 8 | 87 |
| MIMAT0019561 | pma-miR-1788a-5p | 2 | _....... | 8 | 87 |
| MIMAT0017868 | rno-miR-3580-5p | 1 | ......._ | 7 | 87 |
| MIMAT0011294 | dre-miR-1788-5p | 2 | _....... | 8 | 87 |
| MIMAT0009772 | nve-miR-2027-5p | 1 | _....... | 7 | 87 |
| MIMAT0007700 | gga-miR-1788-5p | 2 | _....... | 8 | 87 |
| MIMAT0034775 | efu-miR-9195 | 8 | ......c. | 1 | 87 |
| MIMAT0031399 | mmu-miR-8097 | 8 | .c...... | 1 | 87 |
| MIMAT0029369 | lja-miR7542 | 1 | ......c. | 8 | 87 |
| MIMAT0022215 | mtr-miR5557-5p | 8 | .a...... | 1 | 87 |
| MIMAT0016381 | gga-miR-3531-5p | 1 | .c...... | 8 | 87 |
| MIMAT0009150 | bkv-miR-B1-3p | 1 | ......a. | 8 | 87 |
| MIMAT0009148 | jcv-miR-J1-3p | 1 | ......a. | 8 | 87 |
| MIMAT0037125 | ata-miR2275b-3p | 1 | __...... | 6 | 75 |
| MIMAT0037012 | ssc-miR-9794-3p | 3 | __...... | 8 | 75 |
| MIMAT0036947 | oha-miR-7-2-3p | 7 | __...... | 2 | 75 |
| MIMAT0036649 | oha-miR-100-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036276 | chi-miR-544-5p | 2 | __...... | 7 | 75 |
| MIMAT0035582 | dvi-miR-963-5p | 6 | __...... | 1 | 75 |
| MIMAT0035494 | bdi-miR9487 | 2 | __...... | 7 | 75 |
| MIMAT0035334 | gsa-miR-76b-5p | 2 | __...... | 7 | 75 |
| MIMAT0035316 | gsa-miR-153-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035098 | efu-miR-338 | 8 | __...... | 3 | 75 |
| MIMAT0034783 | efu-miR-9198e | 1 | ......__ | 6 | 75 |
| MIMAT0034050 | gra-miR8679 | 6 | _......_ | 1 | 75 |
| MIMAT0033229 | ppc-miR-8342-5p | 8 | __...... | 3 | 75 |
| MIMAT0033122 | ppc-miR-8301-3p | 8 | __...... | 3 | 75 |
| MIMAT0032700 | ssa-miR-7a-7-3p | 7 | __...... | 2 | 75 |
| MIMAT0032699 | ssa-miR-7a-6-3p | 7 | __...... | 2 | 75 |
| MIMAT0032698 | ssa-miR-7a-5-3p | 7 | __...... | 2 | 75 |
| MIMAT0032697 | ssa-miR-7a-4-3p | 7 | __...... | 2 | 75 |
| MIMAT0032695 | ssa-miR-7a-2-3p | 7 | __...... | 2 | 75 |
| MIMAT0032694 | ssa-miR-7a-1-3p | 7 | __...... | 2 | 75 |
| MIMAT0032279 | ssa-miR-100a-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032278 | ssa-miR-100a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0031687 | bbe-miR-4865-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031565 | ppe-miR6288c-5p | 1 | __...... | 6 | 75 |
| MIMAT0031560 | ppe-miR6288b-5p | 1 | __...... | 6 | 75 |
| MIMAT0031370 | stu-miR169f-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030213 | bdi-miR7738-3p | 2 | ......__ | 7 | 75 |
| MIMAT0029875 | mmu-miR-7680-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029832 | mmu-miR-7663-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029783 | sci-miR-7642-5p | 2 | __...... | 7 | 75 |
| MIMAT0029553 | ipu-miR-7557 | 1 | ......__ | 6 | 75 |
| MIMAT0029139 | ghr-miR7494 | 2 | _......_ | 7 | 75 |
| MIMAT0026437 | sbi-miR6230-3p | 7 | __...... | 2 | 75 |
| MIMAT0027949 | mmu-miR-7022-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027839 | mmu-miR-6968-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025612 | gga-miR-6552-3p | 7 | __...... | 2 | 75 |
| MIMAT0024562 | cca-miR6116-5p | 3 | ......__ | 8 | 75 |
| MIMAT0022577 | ola-miR-137 | 2 | ......__ | 7 | 75 |
| MIMAT0022158 | osa-miR2275d | 1 | __...... | 6 | 75 |
| MIMAT0020629 | mmu-miR-5121 | 2 | _......_ | 7 | 75 |
| MIMAT0020551 | osa-miR5071 | 7 | ......__ | 2 | 75 |
| MIMAT0021009 | gma-miR1535b | 1 | __...... | 6 | 75 |
| MIMAT0020147 | dme-miR-4940-3p | 6 | __...... | 1 | 75 |
| MIMAT0020099 | bfl-miR-4865-5p | 1 | _......_ | 6 | 75 |
| MIMAT0020052 | sko-miR-4835-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019438 | pma-miR-100a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0019371 | pma-miR-7a-3p | 7 | __...... | 2 | 75 |
| MIMAT0019351 | mmu-miR-3967 | 2 | _......_ | 7 | 75 |
| MIMAT0019298 | oar-miR-544-5p | 2 | __...... | 7 | 75 |
| MIMAT0018328 | gma-miR4409 | 7 | __...... | 2 | 75 |
| MIMAT0018299 | gma-miR4387a | 6 | __...... | 1 | 75 |
| MIMAT0018876 | tca-miR-3889-5p | 2 | __...... | 7 | 75 |
| MIMAT0018723 | tca-miR-3839-3p | 2 | __...... | 7 | 75 |
| MIMAT0018620 | tca-miR-3802-5p | 2 | ......__ | 7 | 75 |
| MIMAT0018079 | hsa-miR-1273e | 2 | ......__ | 7 | 75 |
| MIMAT0018075 | hsa-miR-3655 | 1 | _......_ | 6 | 75 |
| MIMAT0018050 | vvi-miR3638-3p | 8 | __...... | 3 | 75 |
| MIMAT0016418 | cin-miR-375-3p | 1 | __...... | 6 | 75 |
| MIMAT0016074 | ppy-miR-636 | 3 | ......__ | 8 | 75 |
| MIMAT0017772 | esi-miR3457-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017605 | aly-miR825-5p | 7 | ......__ | 2 | 75 |
| MIMAT0015615 | bmo-miR-3409 | 8 | __...... | 3 | 75 |
| MIMAT0015507 | bmo-miR-3319 | 6 | _......_ | 1 | 75 |
| MIMAT0014633 | tgu-miR-100-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026968 | tgu-miR-2973-3p | 2 | __...... | 7 | 75 |
| MIMAT0014415 | cqu-miR-932-3p | 8 | ......__ | 3 | 75 |
| MIMAT0014363 | cqu-miR-988-3p | 3 | __...... | 8 | 75 |
| MIMAT0014270 | aae-miR-932-3p | 8 | ......__ | 3 | 75 |
| MIMAT0017359 | rno-miR-544-5p | 1 | __...... | 6 | 75 |
| MIMAT0013727 | bmo-miR-2817 | 6 | __...... | 1 | 75 |
| MIMAT0012515 | dsi-miR-982a | 8 | __...... | 3 | 75 |
| MIMAT0011268 | sme-miR-754d | 3 | ......__ | 8 | 75 |
| MIMAT0011237 | sme-miR-754c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011236 | sme-miR-754b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019132 | tca-miR-932-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019115 | tca-miR-125-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006479 | mml-miR-636 | 3 | ......__ | 8 | 75 |
| MIMAT0007625 | gga-miR-1726 | 3 | _......_ | 8 | 75 |
| MIMAT0007476 | gga-miR-1610 | 3 | _......_ | 8 | 75 |
| MIMAT0007398 | gma-miR1535a | 1 | __...... | 6 | 75 |
| MIMAT0015258 | cin-miR-126-5p | 2 | __...... | 7 | 75 |
| MIMAT0005207 | ppt-miR1076-3p | 7 | ......__ | 2 | 75 |
| MIMAT0011089 | mtr-miR168a | 2 | ......__ | 7 | 75 |
| MIMAT0017282 | mmu-miR-544-5p | 2 | __...... | 7 | 75 |
| MIMAT0026656 | mdo-miR-100-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004021 | sme-miR-754a | 3 | ......__ | 8 | 75 |
| MIMAT0003306 | hsa-miR-636 | 3 | ......__ | 8 | 75 |
| MIMAT0026580 | mml-miR-100-3p | 3 | _......_ | 8 | 75 |
| MIMAT0022899 | ptc-miR169n-3p | 7 | ......__ | 2 | 75 |
| MIMAT0001579 | hcmv-miR-US5-1 | 8 | _......_ | 3 | 75 |
| MIMAT0001312 | cbr-miR-354 | 3 | __...... | 8 | 75 |
| MIMAT0026539 | gga-miR-100-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017091 | rno-miR-7a-2-3p | 7 | __...... | 2 | 75 |
| MIMAT0000696 | cel-miR-354-3p | 3 | __...... | 8 | 75 |
| MIMAT0017071 | mmu-miR-7b-3p | 7 | __...... | 2 | 75 |
| MIMAT0017070 | mmu-miR-7a-2-3p | 7 | __...... | 2 | 75 |
| MIMAT0017051 | mmu-miR-100-3p | 6 | _......_ | 1 | 75 |
