| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggggggt | 8 | ||
| MIMAT0009207 | mdv1-miR-M3-3p | 1 | ........ | 8 | 100 |
| MIMAT0035711 | bhv5-miR-B14 | 2 | _....... | 8 | 87 |
| MIMAT0028115 | hsa-miR-7109-5p | 2 | ......._ | 8 | 87 |
| MIMAT0027862 | mmu-miR-6980-5p | 2 | ......._ | 8 | 87 |
| MIMAT0027674 | hsa-miR-6887-5p | 1 | ......._ | 7 | 87 |
| MIMAT0027490 | hsa-miR-6795-5p | 1 | ......._ | 7 | 87 |
| MIMAT0027404 | hsa-miR-6752-5p | 1 | _....... | 7 | 87 |
| MIMAT0015280 | hsv1-miR-H5-5p | 2 | _....... | 8 | 87 |
| MIMAT0015280 | hsv1-miR-H5-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026512 | gga-miR-30b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0028127 | mmu-miR-7115-5p | 1 | .c...... | 8 | 87 |
| MIMAT0027596 | hsa-miR-6848-5p | 1 | ......c. | 8 | 87 |
| MIMAT0027592 | hsa-miR-6846-5p | 1 | ......c. | 8 | 87 |
| MIMAT0027402 | hsa-miR-6751-5p | 1 | .t...... | 8 | 87 |
| MIMAT0027365 | hsa-miR-6732-5p | 1 | .a...... | 8 | 87 |
| MIMAT0036891 | oha-miR-30b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036172 | chi-miR-361-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035713 | bhv5-miR-B11 | 3 | __...... | 8 | 75 |
| MIMAT0034988 | efu-miR-9313 | 3 | ......__ | 8 | 75 |
| MIMAT0034985 | efu-miR-4667 | 1 | ......__ | 6 | 75 |
| MIMAT0034798 | efu-miR-9208 | 7 | __...... | 2 | 75 |
| MIMAT0034774 | efu-miR-9194 | 2 | ......__ | 7 | 75 |
| MIMAT0034481 | eca-miR-8952 | 8 | ......__ | 3 | 75 |
| MIMAT0034035 | gra-miR7486d | 1 | ......__ | 6 | 75 |
| MIMAT0033724 | pxy-miR-8507-5p | 1 | __...... | 6 | 75 |
| MIMAT0032780 | ath-miR8181 | 1 | ......__ | 6 | 75 |
| MIMAT0032780 | ath-miR8181 | 2 | __...... | 7 | 75 |
| MIMAT0030648 | prd-miR-7911b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030646 | prd-miR-7911a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030398 | ptc-miR7841 | 1 | __...... | 6 | 75 |
| MIMAT0028740 | mdo-miR-7364-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028606 | mdo-miR-7306-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028509 | mdo-miR-7269-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028509 | mdo-miR-7269-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028509 | mdo-miR-7269-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028392 | mmu-miR-7212-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028364 | mml-miR-7200-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028135 | mmu-miR-7119-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028131 | mmu-miR-7117-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028119 | hsa-miR-7111-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028117 | hsa-miR-7110-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028117 | hsa-miR-7110-5p | 2 | __...... | 7 | 75 |
| MIMAT0028071 | mmu-miR-7082-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028052 | mmu-miR-7073-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028044 | mmu-miR-7069-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027952 | mmu-miR-7024-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027950 | mmu-miR-7023-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027916 | mmu-miR-7006-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027916 | mmu-miR-7006-5p | 2 | __...... | 7 | 75 |
| MIMAT0027844 | mmu-miR-6971-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027782 | mmu-miR-6941-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027760 | mmu-miR-6930-5p | 3 | __...... | 8 | 75 |
| MIMAT0027720 | mmu-miR-6910-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027720 | mmu-miR-6910-5p | 2 | __...... | 7 | 75 |
| MIMAT0027718 | mmu-miR-6909-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027694 | mmu-miR-6897-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027670 | hsa-miR-6885-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027640 | hsa-miR-6870-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027619 | hsa-miR-6859-3p | 8 | __...... | 3 | 75 |
| MIMAT0027586 | hsa-miR-6842-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027586 | hsa-miR-6842-5p | 2 | __...... | 7 | 75 |
| MIMAT0027582 | hsa-miR-6840-5p | 6 | __...... | 1 | 75 |
| MIMAT0027570 | hsa-miR-6835-5p | 2 | __...... | 7 | 75 |
| MIMAT0027506 | hsa-miR-6803-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027506 | hsa-miR-6803-5p | 3 | __...... | 8 | 75 |
| MIMAT0027497 | hsa-miR-6798-3p | 8 | __...... | 3 | 75 |
| MIMAT0025721 | gga-miR-6625-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025688 | gga-miR-6594-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025688 | gga-miR-6594-5p | 2 | __...... | 7 | 75 |
| MIMAT0025311 | prv-miR-LLT8 | 2 | ......__ | 7 | 75 |
| MIMAT0025310 | prv-miR-LLT7 | 3 | _......_ | 8 | 75 |
| MIMAT0027288 | ppe-miR477b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027287 | ppe-miR477a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0023987 | cgr-miR-615-5p | 1 | __...... | 6 | 75 |
| MIMAT0023227 | gma-miR482e | 3 | ......__ | 8 | 75 |
| MIMAT0023146 | mtr-miR5759 | 3 | __...... | 8 | 75 |
| MIMAT0022491 | hsa-miR-5698 | 1 | ......__ | 6 | 75 |
| MIMAT0022017 | aca-miR-5404 | 6 | _......_ | 1 | 75 |
| MIMAT0021671 | gma-miR482d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021275 | mtr-miR5266 | 2 | ......__ | 7 | 75 |
| MIMAT0019956 | hsa-miR-4787-5p | 3 | __...... | 8 | 75 |
| MIMAT0019838 | hsa-miR-4723-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019739 | hsa-miR-4665-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019700 | hsa-miR-4640-3p | 7 | __...... | 2 | 75 |
| MIMAT0019653 | pma-miR-4619 | 7 | __...... | 2 | 75 |
| MIMAT0019064 | hsa-miR-4525 | 1 | _......_ | 6 | 75 |
| MIMAT0018999 | hsa-miR-4472 | 3 | ......__ | 8 | 75 |
| MIMAT0018966 | hsa-miR-4447 | 3 | ......__ | 8 | 75 |
| MIMAT0018286 | gma-miR482b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018904 | tca-miR-3900-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018904 | tca-miR-3900-5p | 2 | __...... | 7 | 75 |
| MIMAT0018724 | tca-miR-3840-5p | 2 | __...... | 7 | 75 |
| MIMAT0018654 | tca-miR-3815-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018654 | tca-miR-3815-5p | 2 | __...... | 7 | 75 |
| MIMAT0016238 | ppy-miR-1909 | 3 | ......__ | 8 | 75 |
| MIMAT0016199 | ppy-miR-1275 | 2 | ......__ | 7 | 75 |
| MIMAT0016075 | ppy-miR-637 | 3 | ......__ | 8 | 75 |
| MIMAT0016056 | ppy-miR-615-5p | 1 | __...... | 6 | 75 |
| MIMAT0015849 | ppy-miR-361-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015650 | hsv2-miR-H5 | 1 | _......_ | 6 | 75 |
| MIMAT0015650 | hsv2-miR-H5 | 2 | _......_ | 7 | 75 |
| MIMAT0019189 | rlcv-miR-rL1-22-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014050 | osa-miR2919 | 3 | _......_ | 8 | 75 |
| MIMAT0013934 | ssc-miR-361-3p | 6 | ......__ | 1 | 75 |
| MIMAT0013209 | eca-miR-361-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012976 | eca-miR-615-5p | 1 | __...... | 6 | 75 |
| MIMAT0012835 | rno-miR-615 | 1 | __...... | 6 | 75 |
| MIMAT0012035 | bta-miR-2454-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012032 | bta-miR-1777a | 1 | ......__ | 6 | 75 |
| MIMAT0012005 | bta-miR-2433 | 1 | ......__ | 6 | 75 |
| MIMAT0012002 | bta-miR-2431-3p | 7 | __...... | 2 | 75 |
| MIMAT0012002 | bta-miR-2431-3p | 8 | ......__ | 3 | 75 |
| MIMAT0011855 | bta-miR-2326 | 6 | _......_ | 1 | 75 |
| MIMAT0011817 | bta-miR-2305 | 2 | __...... | 7 | 75 |
| MIMAT0009920 | cfa-miR-615 | 1 | __...... | 6 | 75 |
| MIMAT0009355 | bta-miR-615 | 1 | __...... | 6 | 75 |
| MIMAT0009069 | dya-miR-306-3p | 1 | __...... | 6 | 75 |
| MIMAT0008805 | dse-miR-306-3p | 1 | __...... | 6 | 75 |
| MIMAT0008495 | der-miR-306-3p | 1 | __...... | 6 | 75 |
| MIMAT0008293 | ptr-miR-637 | 3 | ......__ | 8 | 75 |
| MIMAT0008115 | ptr-miR-361 | 7 | ......__ | 2 | 75 |
| MIMAT0007996 | ptr-miR-1275 | 2 | ......__ | 7 | 75 |
| MIMAT0006465 | mml-miR-615-5p | 1 | __...... | 6 | 75 |
| MIMAT0006287 | mml-miR-361-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007683 | gga-miR-1773-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006975 | oan-miR-1421g-5p | 2 | __...... | 7 | 75 |
| MIMAT0005929 | hsa-miR-1275 | 2 | ......__ | 7 | 75 |
| MIMAT0005545 | mcmv-miR-M23-2-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032027 | dme-miR-1004-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004837 | mmu-miR-615-5p | 1 | __...... | 6 | 75 |
| MIMAT0015238 | kshv-miR-K12-12-3p | 1 | ......__ | 6 | 75 |
| MIMAT0003307 | hsa-miR-637 | 3 | ......__ | 8 | 75 |
| MIMAT0004804 | hsa-miR-615-5p | 1 | __...... | 6 | 75 |
| MIMAT0017199 | rno-miR-361-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026486 | hsa-miR-328-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026486 | hsa-miR-328-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017075 | mmu-miR-361-3p | 7 | ......__ | 2 | 75 |
| MIMAT0004682 | hsa-miR-361-3p | 7 | ......__ | 2 | 75 |
| MIMAT0017030 | mmu-miR-328-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017029 | rno-miR-328a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0000394 | dme-miR-306-3p | 1 | __...... | 6 | 75 |
