| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgttatct | 8 | ||
| MIMAT0005804 | mdv1-miR-M7-5p | 1 | ........ | 8 | 100 |
| MIMAT0030260 | bdi-miR7757-3p.2 | 7 | _....... | 1 | 87 |
| MIMAT0028373 | mml-miR-7204-3p | 8 | ......._ | 2 | 87 |
| MIMAT0020874 | dme-miR-977-5p | 8 | _....... | 2 | 87 |
| MIMAT0026038 | mdm-miR7120b | 1 | ......a. | 8 | 87 |
| MIMAT0026037 | mdm-miR7120a | 1 | ......a. | 8 | 87 |
| MIMAT0013457 | mtr-miR2657 | 1 | ......t. | 8 | 87 |
| MIMAT0011414 | sme-miR-754c-1-3p | 1 | .t...... | 8 | 87 |
| MIMAT0017347 | mmu-miR-669o-3p | 8 | ......g. | 1 | 87 |
| MIMAT0017251 | mmu-miR-669a-3-3p | 8 | ......g. | 1 | 87 |
| MIMAT0017243 | mmu-miR-669a-3p | 8 | ......g. | 1 | 87 |
| MIMAT0037236 | ata-miR9863b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0037104 | ata-miR9863a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036875 | oha-miR-2985b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036873 | oha-miR-2985a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036872 | oha-miR-2985a-2-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036650 | oha-miR-101a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0034403 | cfa-miR-8895 | 1 | __...... | 6 | 75 |
| MIMAT0033798 | pxy-miR-8540 | 3 | ......__ | 8 | 75 |
| MIMAT0033791 | pxy-miR-8537b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0033721 | pxy-miR-8537a | 3 | ......__ | 8 | 75 |
| MIMAT0032282 | ssa-miR-101b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031565 | ppe-miR6288c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031560 | ppe-miR6288b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030371 | ptc-miR7812 | 2 | ......__ | 7 | 75 |
| MIMAT0029573 | ipu-miR-7574 | 2 | __...... | 7 | 75 |
| MIMAT0028957 | oan-miR-2985-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028854 | mdo-miR-7386l-5p | 8 | __...... | 3 | 75 |
| MIMAT0028683 | mdo-miR-7337-3p | 3 | _......_ | 8 | 75 |
| MIMAT0024165 | ggo-miR-577 | 8 | __...... | 3 | 75 |
| MIMAT0023728 | cgr-miR-101b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023287 | osa-miR5815 | 3 | ......__ | 8 | 75 |
| MIMAT0022335 | cin-miR-4179b-5p | 1 | __...... | 6 | 75 |
| MIMAT0020124 | xbo-miR-4907 | 8 | __...... | 3 | 75 |
| MIMAT0019997 | cel-miR-4811-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019267 | oar-miR-494-5p | 3 | _......_ | 8 | 75 |
| MIMAT0018492 | csi-miR3951 | 7 | __...... | 2 | 75 |
| MIMAT0017947 | ath-miR4239 | 3 | ......__ | 8 | 75 |
| MIMAT0016443 | cin-miR-4000i-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017891 | rno-miR-2985 | 1 | ......__ | 6 | 75 |
| MIMAT0016019 | ppy-miR-577 | 7 | __...... | 2 | 75 |
| MIMAT0017640 | aly-miR852-3p | 7 | __...... | 2 | 75 |
| MIMAT0015538 | bmo-miR-3353 | 8 | __...... | 3 | 75 |
| MIMAT0015012 | hsa-miR-3143 | 6 | ......__ | 1 | 75 |
| MIMAT0014890 | mmu-miR-669p-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012337 | dps-miR-2540-3p | 1 | ......__ | 6 | 75 |
| MIMAT0011868 | bta-miR-2335 | 6 | __...... | 1 | 75 |
| MIMAT0011788 | dme-miR-2281-5p | 2 | __...... | 7 | 75 |
| MIMAT0008251 | ptr-miR-577 | 7 | __...... | 2 | 75 |
| MIMAT0007838 | osa-miR1881 | 3 | ......__ | 8 | 75 |
| MIMAT0007785 | osa-miR1428e-3p | 8 | __...... | 3 | 75 |
| MIMAT0007783 | osa-miR1428d | 8 | __...... | 3 | 75 |
| MIMAT0007782 | osa-miR1428c | 8 | __...... | 3 | 75 |
| MIMAT0007781 | osa-miR1428b | 8 | __...... | 3 | 75 |
| MIMAT0006438 | mml-miR-577-5p | 7 | __...... | 2 | 75 |
| MIMAT0007654 | gga-miR-1749-5p | 6 | __...... | 1 | 75 |
| MIMAT0007280 | osa-miR1428a-3p | 8 | __...... | 3 | 75 |
| MIMAT0004275 | ath-miR852 | 7 | __...... | 2 | 75 |
| MIMAT0003242 | hsa-miR-577 | 7 | __...... | 2 | 75 |
| MIMAT0017216 | mmu-miR-487b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0002559 | ptr-miR-216a | 1 | __...... | 6 | 75 |
| MIMAT0004513 | hsa-miR-101-5p | 3 | _......_ | 8 | 75 |
