| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttctgac | 7 | ||
| MIMAT0033902 | atr-miR8610.2 | 1 | ....... | 7 | 100 |
| MIMAT0033358 | str-miR-7880k-5p | 8 | ....... | 2 | 100 |
| MIMAT0032757 | ssa-miR-8163-5p | 2 | ....... | 8 | 100 |
| MIMAT0026408 | sbi-miR6221-5p | 1 | ....... | 7 | 100 |
| MIMAT0027917 | mmu-miR-7006-3p | 2 | ....... | 8 | 100 |
| MIMAT0022952 | mmu-miR-1966-3p | 2 | ....... | 8 | 100 |
| MIMAT0007207 | oan-miR-1401-5p | 2 | ....... | 8 | 100 |
| MIMAT0005558 | mcmv-miR-m108-1-3p | 2 | ....... | 8 | 100 |
| MIMAT0005808 | ghr-miR156c | 8 | ....... | 2 | 100 |
| MIMAT0037098 | ata-miR5070-5p | 1 | _...... | 6 | 85 |
| MIMAT0036884 | oha-miR-301a-5p | 3 | _...... | 8 | 85 |
| MIMAT0036882 | oha-miR-301b-5p | 3 | _...... | 8 | 85 |
| MIMAT0036118 | chi-miR-301a-5p | 3 | _...... | 8 | 85 |
| MIMAT0035761 | tae-miR9654a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0035395 | nve-miR-9434 | 1 | _...... | 6 | 85 |
| MIMAT0034832 | efu-miR-9230a | 1 | ......_ | 6 | 85 |
| MIMAT0034790 | efu-miR-9188b | 1 | ......_ | 6 | 85 |
| MIMAT0034720 | eca-miR-9144 | 1 | _...... | 6 | 85 |
| MIMAT0034348 | cfa-miR-8853 | 1 | _...... | 6 | 85 |
| MIMAT0033996 | gra-miR8640 | 1 | _...... | 6 | 85 |
| MIMAT0033838 | atr-miR8562c | 6 | ......_ | 1 | 85 |
| MIMAT0033498 | str-miR-7880y-5p | 7 | _...... | 2 | 85 |
| MIMAT0033323 | str-miR-7880g-5p | 7 | _...... | 2 | 85 |
| MIMAT0033202 | ppc-miR-8329-5p | 3 | _...... | 8 | 85 |
| MIMAT0032814 | cel-miR-8200-3p | 1 | _...... | 6 | 85 |
| MIMAT0032598 | ssa-miR-301d-5p | 2 | _...... | 7 | 85 |
| MIMAT0030307 | bdi-miR7777-5p.2 | 1 | _...... | 6 | 85 |
| MIMAT0029911 | mmu-miR-7243-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029305 | mes-miR1446 | 1 | ......_ | 6 | 85 |
| MIMAT0029114 | gga-miR-7480-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028995 | oan-miR-7422a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028688 | mdo-miR-7340-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028628 | mdo-miR-7314-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028439 | mmu-miR-7235-3p | 1 | _...... | 6 | 85 |
| MIMAT0028377 | mml-miR-7205-3p | 3 | _...... | 8 | 85 |
| MIMAT0028176 | dev-miR-D6-3p | 6 | _...... | 1 | 85 |
| MIMAT0027956 | mmu-miR-7026-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027918 | mmu-miR-7007-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027805 | mmu-miR-6952-3p | 3 | _...... | 8 | 85 |
| MIMAT0027730 | mmu-miR-6915-5p | 8 | _...... | 3 | 85 |
| MIMAT0027502 | hsa-miR-6801-5p | 8 | _...... | 3 | 85 |
| MIMAT0025850 | hsa-miR-6719-3p | 1 | _...... | 6 | 85 |
| MIMAT0025796 | gga-miR-6690-5p | 6 | ......_ | 1 | 85 |
| MIMAT0025761 | gga-miR-6660-3p | 1 | _...... | 6 | 85 |
| MIMAT0025676 | gga-miR-6585-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025255 | ptc-miR6451 | 8 | _...... | 3 | 85 |
| MIMAT0023890 | cgr-miR-301a-5p | 3 | _...... | 8 | 85 |
| MIMAT0022620 | ola-miR-301a-5p | 3 | _...... | 8 | 85 |
| MIMAT0022610 | ola-miR-301b-5p | 3 | _...... | 8 | 85 |
| MIMAT0023016 | bra-miR5718 | 6 | ......_ | 1 | 85 |
| MIMAT0021917 | aca-miR-301b-5p | 3 | _...... | 8 | 85 |
| MIMAT0021915 | aca-miR-301a-5p | 3 | _...... | 8 | 85 |
| MIMAT0020725 | bdi-miR5178-3p | 1 | _...... | 6 | 85 |
| MIMAT0020046 | sko-miR-4832 | 6 | ......_ | 1 | 85 |
| MIMAT0019617 | pma-miR-4584 | 1 | _...... | 6 | 85 |
| MIMAT0019291 | oar-miR-3956-3p | 1 | _...... | 6 | 85 |
| MIMAT0018293 | gma-miR1520m | 8 | ......_ | 3 | 85 |
| MIMAT0018292 | gma-miR1520l | 8 | ......_ | 3 | 85 |
| MIMAT0018291 | gma-miR1520k | 8 | ......_ | 3 | 85 |
| MIMAT0016877 | hsa-miR-4256 | 2 | _...... | 7 | 85 |
| MIMAT0016856 | hsa-miR-4303 | 1 | ......_ | 6 | 85 |
| MIMAT0017391 | tgu-miR-301-5p | 3 | _...... | 8 | 85 |
| MIMAT0026932 | mdo-miR-301-5p | 1 | _...... | 6 | 85 |
| MIMAT0013340 | mtr-miR2620 | 1 | ......_ | 6 | 85 |
| MIMAT0012014 | bta-miR-2439-3p | 8 | ......_ | 3 | 85 |
| MIMAT0011159 | hsa-miR-2115-3p | 8 | ......_ | 3 | 85 |
| MIMAT0009147 | jcv-miR-J1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008403 | hsv1-miR-H5-3p | 6 | _...... | 1 | 85 |
| MIMAT0026850 | mml-miR-301a-5p | 1 | _...... | 6 | 85 |
| MIMAT0007741 | gga-miR-301b-5p | 3 | _...... | 8 | 85 |
| MIMAT0007721 | gga-miR-1804 | 6 | ......_ | 1 | 85 |
| MIMAT0006008 | ptc-miR1446e | 1 | ......_ | 6 | 85 |
| MIMAT0006007 | ptc-miR1446d | 1 | ......_ | 6 | 85 |
| MIMAT0006006 | ptc-miR1446c | 1 | ......_ | 6 | 85 |
| MIMAT0006005 | ptc-miR1446b | 1 | ......_ | 6 | 85 |
| MIMAT0006004 | ptc-miR1446a | 1 | ......_ | 6 | 85 |
| MIMAT0026755 | oan-miR-1420e-5p | 2 | _...... | 7 | 85 |
| MIMAT0006909 | oan-miR-301-5p | 3 | _...... | 8 | 85 |
| MIMAT0017300 | rno-miR-301b-5p | 3 | _...... | 8 | 85 |
| MIMAT0005190 | ppt-miR1064-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032026 | hsa-miR-301b-5p | 3 | _...... | 8 | 85 |
| MIMAT0017232 | mmu-miR-301b-5p | 3 | _...... | 8 | 85 |
| MIMAT0003256 | hsa-miR-589-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003174 | rno-miR-540-3p | 8 | _...... | 3 | 85 |
| MIMAT0003167 | mmu-miR-540-3p | 8 | _...... | 3 | 85 |
| MIMAT0031991 | dre-miR-301c-5p | 3 | _...... | 8 | 85 |
| MIMAT0026531 | gga-miR-301a-5p | 1 | _...... | 6 | 85 |
| MIMAT0022696 | hsa-miR-301a-5p | 3 | _...... | 8 | 85 |
| MIMAT0017026 | rno-miR-301a-5p | 3 | _...... | 8 | 85 |
| MIMAT0017008 | mmu-miR-301a-5p | 3 | _...... | 8 | 85 |
