| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaacaacc | 8 | ||
| MIMAT0011934 | bta-miR-2325c | 8 | ........ | 1 | 100 |
| MIMAT0037130 | ata-miR5168-5p | 8 | _....... | 2 | 87 |
| MIMAT0035693 | bra-miR9567-5p | 2 | ......._ | 8 | 87 |
| MIMAT0034546 | eca-miR-9006 | 7 | _....... | 1 | 87 |
| MIMAT0026345 | bma-miR-5847 | 1 | _....... | 7 | 87 |
| MIMAT0023070 | tur-miR-210-5p | 8 | ......._ | 2 | 87 |
| MIMAT0021316 | mtr-miR5277 | 8 | _....... | 2 | 87 |
| MIMAT0016617 | cin-miR-4064-3p | 1 | _....... | 7 | 87 |
| MIMAT0016356 | gso-miR1510a | 8 | ......._ | 2 | 87 |
| MIMAT0016355 | gso-miR1510b | 8 | ......._ | 2 | 87 |
| MIMAT0017600 | aly-miR822-3p | 2 | ......._ | 8 | 87 |
| MIMAT0014051 | osa-miR2920 | 1 | ......._ | 7 | 87 |
| MIMAT0011927 | bta-miR-2325b | 8 | _....... | 2 | 87 |
| MIMAT0011680 | ppc-miR-2256 | 8 | ......._ | 2 | 87 |
| MIMAT0010082 | gma-miR1510b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0007699 | gga-miR-1787 | 8 | ......._ | 2 | 87 |
| MIMAT0007513 | gga-miR-1814 | 8 | _....... | 2 | 87 |
| MIMAT0036256 | chi-miR-495-3p | 1 | ......a. | 8 | 87 |
| MIMAT0035031 | efu-miR-495 | 1 | ......a. | 8 | 87 |
| MIMAT0024104 | ggo-miR-495 | 1 | ......a. | 8 | 87 |
| MIMAT0023561 | tca-miR-6010-5p | 8 | ......a. | 1 | 87 |
| MIMAT0019274 | oar-miR-495-3p | 1 | ......a. | 8 | 87 |
| MIMAT0015916 | ppy-miR-495 | 1 | ......a. | 8 | 87 |
| MIMAT0013165 | eca-miR-495 | 1 | ......a. | 8 | 87 |
| MIMAT0011816 | bta-miR-2304 | 8 | .c...... | 1 | 87 |
| MIMAT0011713 | ppc-miR-67 | 1 | .c...... | 8 | 87 |
| MIMAT0009335 | bta-miR-495 | 1 | ......a. | 8 | 87 |
| MIMAT0008169 | ptr-miR-495 | 1 | ......a. | 8 | 87 |
| MIMAT0006721 | cfa-miR-495 | 1 | ......a. | 8 | 87 |
| MIMAT0006357 | mml-miR-495-3p | 1 | ......a. | 8 | 87 |
| MIMAT0005850 | mmu-miR-1192 | 1 | ......a. | 8 | 87 |
| MIMAT0005320 | rno-miR-495 | 1 | ......a. | 8 | 87 |
| MIMAT0003456 | mmu-miR-495-3p | 1 | ......a. | 8 | 87 |
| MIMAT0003728 | mmu-miR-374b-3p | 8 | .t...... | 1 | 87 |
| MIMAT0002817 | hsa-miR-495-3p | 1 | ......a. | 8 | 87 |
| MIMAT0037125 | ata-miR2275b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0037111 | ata-miR2275a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036983 | tae-miR9773 | 7 | ......__ | 2 | 75 |
| MIMAT0036968 | gra-miR827b | 7 | ......__ | 2 | 75 |
| MIMAT0036825 | oha-miR-21-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035334 | gsa-miR-76b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035286 | gsa-miR-76a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035263 | gsa-miR-67-3p | 3 | __...... | 8 | 75 |
| MIMAT0034381 | cfa-miR-8881 | 7 | ......__ | 2 | 75 |
| MIMAT0034336 | cfa-miR-8843 | 6 | ......__ | 1 | 75 |
| MIMAT0033768 | pxy-miR-8526 | 2 | __...... | 7 | 75 |
| MIMAT0033698 | pxy-miR-8490 | 6 | ......__ | 1 | 75 |
| MIMAT0033606 | sma-miR-8448-5p | 3 | _......_ | 8 | 75 |
| MIMAT0033215 | ppc-miR-8335-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032918 | ppc-miR-8233-5p | 8 | __...... | 3 | 75 |
| MIMAT0032617 | ssa-miR-338a-4-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031748 | bma-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0031672 | bbe-miR-34b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031196 | stu-miR8014-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030755 | prd-miR-67-3p | 3 | __...... | 8 | 75 |
| MIMAT0030231 | bdi-miR7745-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030206 | bdi-miR7735-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030172 | bdi-miR7723a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029775 | cbn-miR-67 | 3 | __...... | 8 | 75 |
| MIMAT0029771 | cbn-miR-355 | 7 | ......__ | 2 | 75 |
| MIMAT0028463 | mdo-miR-7248-3p | 1 | __...... | 6 | 75 |
| MIMAT0028436 | mmu-miR-7234-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028354 | mml-miR-323b-5p | 7 | __...... | 2 | 75 |
| MIMAT0028343 | mml-miR-7192-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028107 | ddi-miR-7104 | 1 | ......__ | 6 | 75 |
| MIMAT0027841 | mmu-miR-6969-3p | 7 | _......_ | 2 | 75 |
| MIMAT0025644 | gga-miR-6568-3p | 1 | __...... | 6 | 75 |
| MIMAT0025601 | gga-miR-6548-5p | 1 | _......_ | 6 | 75 |
| MIMAT0024981 | hme-miR-3327 | 1 | _......_ | 6 | 75 |
| MIMAT0024976 | hme-miR-307 | 2 | __...... | 7 | 75 |
| MIMAT0024448 | mse-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0023952 | cgr-miR-410-5p | 7 | __...... | 2 | 75 |
| MIMAT0031159 | stu-miR6024-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023407 | hco-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0023134 | mtr-miR5752b | 8 | ......__ | 3 | 75 |
| MIMAT0023133 | mtr-miR5752a | 8 | ......__ | 3 | 75 |
| MIMAT0022579 | ola-miR-338-5p | 1 | _......_ | 6 | 75 |
| MIMAT0023069 | tur-miR-307-3p | 3 | __...... | 8 | 75 |
| MIMAT0022416 | ath-miR5650 | 6 | ......__ | 1 | 75 |
| MIMAT0022243 | sbi-miR5565e | 6 | ......__ | 1 | 75 |
| MIMAT0022158 | osa-miR2275d | 7 | ......__ | 2 | 75 |
| MIMAT0022076 | aca-miR-5452-3p | 2 | _......_ | 7 | 75 |
| MIMAT0021866 | aca-miR-21-3p | 2 | _......_ | 7 | 75 |
| MIMAT0021524 | asu-miR-67-3p | 3 | __...... | 8 | 75 |
| MIMAT0020608 | mmu-miR-5101 | 7 | ......__ | 2 | 75 |
| MIMAT0021009 | gma-miR1535b | 7 | ......__ | 2 | 75 |
| MIMAT0022741 | hsa-miR-3529-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019609 | pma-miR-4576 | 7 | ......__ | 2 | 75 |
| MIMAT0019377 | pma-miR-10b-3p | 8 | __...... | 3 | 75 |
| MIMAT0019355 | mmu-miR-3970 | 8 | __...... | 3 | 75 |
| MIMAT0019275 | oar-miR-3958-5p | 7 | __...... | 2 | 75 |
| MIMAT0018327 | gma-miR4408 | 2 | _......_ | 7 | 75 |
| MIMAT0018322 | gma-miR1520p | 8 | _......_ | 3 | 75 |
| MIMAT0018234 | gma-miR4364b | 2 | _......_ | 7 | 75 |
| MIMAT0018872 | tca-miR-3887-5p | 8 | __...... | 3 | 75 |
| MIMAT0018732 | tca-miR-3843-5p | 7 | _......_ | 2 | 75 |
| MIMAT0018509 | ame-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0017979 | ssc-miR-494 | 7 | __...... | 2 | 75 |
| MIMAT0017964 | ssc-miR-652 | 1 | __...... | 6 | 75 |
| MIMAT0017956 | ssc-miR-382 | 8 | _......_ | 3 | 75 |
| MIMAT0016823 | cin-miR-4203-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016686 | cin-miR-4101-3p | 8 | __...... | 3 | 75 |
| MIMAT0016658 | cin-miR-4084-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016632 | cin-miR-4072-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016270 | sja-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0015898 | ppy-miR-453 | 7 | __...... | 2 | 75 |
| MIMAT0015694 | nvi-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0017704 | aly-miR3436-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017687 | aly-miR837-5p | 8 | ......__ | 3 | 75 |
| MIMAT0017626 | aly-miR840-3p | 6 | ......__ | 1 | 75 |
| MIMAT0015591 | bmo-miR-2733i-5p | 7 | _......_ | 2 | 75 |
| MIMAT0015514 | bmo-miR-3327-5p | 1 | _......_ | 6 | 75 |
| MIMAT0015419 | bmo-miR-3236 | 3 | ......__ | 8 | 75 |
| MIMAT0001630 | hsa-miR-323b-5p | 7 | __...... | 2 | 75 |
| MIMAT0014729 | api-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0014636 | tgu-miR-21-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014296 | aae-miR-307 | 2 | __...... | 7 | 75 |
| MIMAT0016953 | rlcv-miR-rL1-29-3p | 8 | ......__ | 3 | 75 |
| MIMAT0013811 | osa-miR2864.2 | 6 | ......__ | 1 | 75 |
| MIMAT0017372 | rno-miR-496-5p | 7 | __...... | 2 | 75 |
| MIMAT0012701 | isc-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0012665 | dpu-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0013503 | mtr-miR2676f | 8 | ......__ | 3 | 75 |
| MIMAT0013502 | mtr-miR2676e | 8 | ......__ | 3 | 75 |
| MIMAT0013501 | mtr-miR2676d | 8 | ......__ | 3 | 75 |
| MIMAT0013500 | mtr-miR2676c | 8 | ......__ | 3 | 75 |
| MIMAT0013499 | mtr-miR2676b | 8 | ......__ | 3 | 75 |
| MIMAT0013498 | mtr-miR2676a | 8 | ......__ | 3 | 75 |
| MIMAT0020912 | dme-miR-2491-3p | 2 | _......_ | 7 | 75 |
| MIMAT0011987 | bta-miR-2420 | 7 | __...... | 2 | 75 |
| MIMAT0011774 | zma-miR2275d-3p | 7 | ......__ | 2 | 75 |
| MIMAT0011768 | zma-miR2275a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0011596 | crm-miR-67-3p | 3 | __...... | 8 | 75 |
| MIMAT0011535 | crm-miR-355 | 7 | ......__ | 2 | 75 |
| MIMAT0012164 | sme-miR-2173-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012160 | sme-miR-2168-3p | 3 | __...... | 8 | 75 |
| MIMAT0010137 | lmi-miR-307-3p | 3 | __...... | 8 | 75 |
| MIMAT0010002 | bfl-miR-34b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009675 | cte-miR-67 | 3 | __...... | 8 | 75 |
| MIMAT0009570 | lgi-miR-67 | 3 | __...... | 8 | 75 |
| MIMAT0009325 | bta-miR-453 | 7 | __...... | 2 | 75 |
| MIMAT0009054 | dya-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0009031 | dwi-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0008953 | dvi-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0008884 | dsi-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0008811 | dse-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0008697 | dpe-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0008665 | dmo-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0008562 | dgr-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0008497 | der-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0008434 | dan-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0008389 | tca-miR-307-3p | 3 | __...... | 8 | 75 |
| MIMAT0008155 | ptr-miR-453 | 7 | __...... | 2 | 75 |
| MIMAT0026906 | mml-miR-656-5p | 7 | __...... | 2 | 75 |
| MIMAT0026885 | mml-miR-494-5p | 7 | __...... | 2 | 75 |
| MIMAT0006337 | mml-miR-453 | 7 | __...... | 2 | 75 |
| MIMAT0026869 | mml-miR-410-5p | 7 | __...... | 2 | 75 |
| MIMAT0007398 | gma-miR1535a | 7 | ......__ | 2 | 75 |
| MIMAT0007368 | gma-miR1510a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005369 | tae-miR1134 | 2 | _......_ | 7 | 75 |
| MIMAT0017321 | rno-miR-652-5p | 1 | __...... | 6 | 75 |
| MIMAT0017303 | rno-miR-410-5p | 7 | __...... | 2 | 75 |
| MIMAT0017299 | rno-miR-196c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005258 | smo-miR1101-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005204 | ppt-miR1074 | 8 | __...... | 3 | 75 |
| MIMAT0032021 | ath-miR840-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004014 | sme-miR-67-3p | 3 | __...... | 8 | 75 |
| MIMAT0026643 | gga-miR-21-3p | 2 | _......_ | 7 | 75 |
| MIMAT0003718 | ebv-miR-BART19-3p | 8 | ......__ | 3 | 75 |
| MIMAT0004208 | bmo-miR-307-3p | 3 | __...... | 8 | 75 |
| MIMAT0017218 | rno-miR-494-5p | 7 | __...... | 2 | 75 |
| MIMAT0017215 | mmu-miR-494-5p | 7 | __...... | 2 | 75 |
| MIMAT0026607 | hsa-miR-494-5p | 7 | __...... | 2 | 75 |
| MIMAT0026558 | hsa-miR-410-5p | 7 | __...... | 2 | 75 |
| MIMAT0001519 | aga-miR-307 | 3 | __...... | 8 | 75 |
| MIMAT0001319 | cbr-miR-355 | 7 | ......__ | 2 | 75 |
| MIMAT0001257 | dps-miR-307a | 3 | __...... | 8 | 75 |
| MIMAT0017172 | mmu-miR-410-5p | 7 | __...... | 2 | 75 |
| MIMAT0000697 | cel-miR-355-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000480 | cbr-miR-67 | 3 | __...... | 8 | 75 |
| MIMAT0000398 | dme-miR-307a-3p | 3 | __...... | 8 | 75 |
| MIMAT0000039 | cel-miR-67-3p | 3 | __...... | 8 | 75 |
