| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aacgtgc | 7 | ||
| MIMAT0030487 | prd-miR-7871-3p | 7 | ....... | 1 | 100 |
| MIMAT0027715 | mmu-miR-6907-3p | 1 | ....... | 7 | 100 |
| MIMAT0019644 | pma-miR-4610 | 1 | ....... | 7 | 100 |
| MIMAT0006385 | mml-miR-519b | 1 | ....... | 7 | 100 |
| MIMAT0037213 | ata-miR164a-3p | 2 | _...... | 7 | 85 |
| MIMAT0035871 | bra-miR164e-3p | 2 | _...... | 7 | 85 |
| MIMAT0032745 | ssa-miR-2184-3p | 6 | _...... | 1 | 85 |
| MIMAT0030834 | prd-miR-7966b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030720 | prd-miR-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0027435 | hsa-miR-6767-3p | 3 | _...... | 8 | 85 |
| MIMAT0019638 | pma-miR-4604 | 1 | _...... | 6 | 85 |
| MIMAT0018257 | gma-miR1520i | 1 | ......_ | 6 | 85 |
| MIMAT0016807 | cin-miR-4189-5p | 1 | _...... | 6 | 85 |
| MIMAT0016659 | cin-miR-4085-5p | 8 | _...... | 3 | 85 |
| MIMAT0014525 | tgu-miR-2989 | 6 | _...... | 1 | 85 |
| MIMAT0014441 | cqu-miR-1889-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014234 | aae-miR-1889-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015319 | zma-miR164g-3p | 2 | _...... | 7 | 85 |
| MIMAT0015318 | zma-miR164f-3p | 2 | _...... | 7 | 85 |
| MIMAT0013969 | bhv1-miR-B7 | 6 | ......_ | 1 | 85 |
| MIMAT0011550 | crm-miR-52-3p | 6 | ......_ | 1 | 85 |
| MIMAT0026872 | mml-miR-424-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026851 | mml-miR-302a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007713 | gga-miR-1798-5p | 1 | ......_ | 6 | 85 |
| MIMAT0005544 | mcmv-miR-M23-2-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005386 | cre-miR1148.1 | 3 | ......_ | 8 | 85 |
| MIMAT0004416 | rrv-miR-rR1-7-3p | 7 | _...... | 2 | 85 |
| MIMAT0020311 | cel-miR-52-3p | 6 | ......_ | 1 | 85 |
