| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaggatac | 8 | ||
| MIMAT0034019 | gra-miR8654c | 1 | ........ | 8 | 100 |
| MIMAT0034018 | gra-miR8654b | 1 | ........ | 8 | 100 |
| MIMAT0034017 | gra-miR8654a | 1 | ........ | 8 | 100 |
| MIMAT0033678 | sma-miR-8478-3p | 1 | ......._ | 7 | 87 |
| MIMAT0018699 | tca-miR-iab-8-3p | 1 | _....... | 7 | 87 |
| MIMAT0017936 | aly-miR4247 | 8 | _....... | 2 | 87 |
| MIMAT0015568 | bmo-miR-3377-3p | 7 | ......._ | 1 | 87 |
| MIMAT0012505 | dsi-miR-iab-8-3p | 1 | _....... | 7 | 87 |
| MIMAT0012285 | dps-miR-iab-8-3p | 1 | _....... | 7 | 87 |
| MIMAT0031422 | mmu-miR-8116 | 1 | ......c. | 8 | 87 |
| MIMAT0032254 | rgl-miR7808 | 1 | ......g. | 8 | 87 |
| MIMAT0016605 | cin-miR-4058-5p | 1 | ......g. | 8 | 87 |
| MIMAT0036401 | gma-miR9764 | 2 | __...... | 7 | 75 |
| MIMAT0036263 | chi-miR-500-5p | 8 | ......__ | 3 | 75 |
| MIMAT0036173 | chi-miR-362-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035915 | chi-miR-1185-5p | 3 | _......_ | 8 | 75 |
| MIMAT0035636 | dvi-miR-9546-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035617 | dvi-miR-iab-8-3p | 3 | _......_ | 8 | 75 |
| MIMAT0034072 | gra-miR7504n | 1 | _......_ | 6 | 75 |
| MIMAT0033878 | atr-miR8591 | 1 | ......__ | 6 | 75 |
| MIMAT0033673 | sma-miR-8476-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033155 | ppc-miR-8312-3p | 8 | ......__ | 3 | 75 |
| MIMAT0033092 | ppc-miR-8289-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032853 | ppc-miR-8213-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032796 | cel-miR-8191-3p | 6 | __...... | 1 | 75 |
| MIMAT0031848 | cpa-miR8151 | 2 | __...... | 7 | 75 |
| MIMAT0031838 | cpa-miR8141 | 2 | __...... | 7 | 75 |
| MIMAT0031396 | mmu-miR-8095 | 2 | ......__ | 7 | 75 |
| MIMAT0030709 | prd-miR-7930-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030143 | bdi-miR7711-3p.4 | 6 | _......_ | 1 | 75 |
| MIMAT0030060 | oar-miR-362 | 7 | ......__ | 2 | 75 |
| MIMAT0028919 | mdo-miR-7398p-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028905 | mdo-miR-7398n-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028598 | mdo-miR-1643b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028379 | mml-miR-7206-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028351 | mml-miR-7195-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028261 | mml-miR-3167-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028236 | mml-miR-500b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0026346 | bma-miR-5848 | 2 | _......_ | 7 | 75 |
| MIMAT0025290 | hbr-miR476 | 8 | ......__ | 3 | 75 |
| MIMAT0025131 | mmu-miR-6385 | 3 | ......__ | 8 | 75 |
| MIMAT0024872 | osa-miR5512b | 2 | _......_ | 7 | 75 |
| MIMAT0024858 | mmu-miR-6237 | 3 | ......__ | 8 | 75 |
| MIMAT0024314 | mml-miR-1185-5p | 3 | _......_ | 8 | 75 |
| MIMAT0024173 | ggo-miR-1185 | 3 | _......_ | 8 | 75 |
| MIMAT0023975 | cgr-miR-501-5p | 7 | ......__ | 2 | 75 |
| MIMAT0023934 | cgr-miR-362 | 7 | ......__ | 2 | 75 |
| MIMAT0022626 | ola-miR-144 | 1 | _......_ | 6 | 75 |
| MIMAT0022145 | osa-miR5512a | 2 | _......_ | 7 | 75 |
| MIMAT0021904 | aca-miR-26-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0021255 | mtr-miR2111l | 6 | ......__ | 1 | 75 |
| MIMAT0021122 | hsa-miR-5191 | 1 | _......_ | 6 | 75 |
| MIMAT0020579 | osa-miR5080 | 3 | ......__ | 8 | 75 |
| MIMAT0020482 | bfl-miR-4892 | 3 | _......_ | 8 | 75 |
| MIMAT0019546 | pma-miR-429-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019412 | pma-miR-26b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019341 | mmu-miR-3963 | 7 | __...... | 2 | 75 |
| MIMAT0019323 | oar-miR-541-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019288 | oar-miR-1185-5p | 3 | _......_ | 8 | 75 |
| MIMAT0018164 | hsa-miR-3713 | 7 | __...... | 2 | 75 |
| MIMAT0018104 | hsa-miR-3679-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017958 | ssc-miR-362 | 7 | ......__ | 2 | 75 |
| MIMAT0016925 | hsa-miR-500b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016148 | ppy-miR-1185 | 3 | _......_ | 8 | 75 |
| MIMAT0015924 | ppy-miR-502-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015922 | ppy-miR-500 | 8 | ......__ | 3 | 75 |
| MIMAT0015850 | ppy-miR-362-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017708 | aly-miR3438-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017598 | aly-miR781-3p | 7 | __...... | 2 | 75 |
| MIMAT0014859 | mmu-miR-3075-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014384 | cqu-miR-317-5p | 3 | __...... | 8 | 75 |
| MIMAT0013225 | eca-miR-502-5p | 6 | ......__ | 1 | 75 |
| MIMAT0013224 | eca-miR-501-5p | 6 | ......__ | 1 | 75 |
| MIMAT0013223 | eca-miR-500 | 8 | ......__ | 3 | 75 |
| MIMAT0013210 | eca-miR-362-5p | 7 | ......__ | 2 | 75 |
| MIMAT0013123 | eca-miR-1185 | 3 | _......_ | 8 | 75 |
| MIMAT0012828 | rno-miR-362-5p | 7 | ......__ | 2 | 75 |
| MIMAT0012784 | mml-miR-541-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031031 | mdo-miR-26-1-3p | 8 | _......_ | 3 | 75 |
| MIMAT0013542 | cte-miR-2689 | 6 | _......_ | 1 | 75 |
| MIMAT0026926 | mtr-miR2111d-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012507 | dsi-miR-1001-3p | 8 | ......__ | 3 | 75 |
| MIMAT0012359 | dps-miR-2549-3p | 2 | ......__ | 7 | 75 |
| MIMAT0012288 | dps-miR-2504 | 3 | ......__ | 8 | 75 |
| MIMAT0012070 | bta-miR-2478 | 6 | __...... | 1 | 75 |
| MIMAT0012049 | bta-miR-2462 | 2 | ......__ | 7 | 75 |
| MIMAT0009973 | bta-miR-1185 | 3 | _......_ | 8 | 75 |
| MIMAT0009886 | cfa-miR-362 | 7 | ......__ | 2 | 75 |
| MIMAT0009337 | bta-miR-500 | 8 | ......__ | 3 | 75 |
| MIMAT0009298 | bta-miR-362-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032073 | dvi-miR-317-5p | 3 | __...... | 8 | 75 |
| MIMAT0032065 | dvi-miR-124-5p | 7 | __...... | 2 | 75 |
| MIMAT0008175 | ptr-miR-502 | 6 | ......__ | 1 | 75 |
| MIMAT0008173 | ptr-miR-500 | 8 | ......__ | 3 | 75 |
| MIMAT0007953 | ptr-miR-1185 | 3 | _......_ | 8 | 75 |
| MIMAT0006365 | mml-miR-502-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006364 | mml-miR-501-5p | 7 | ......__ | 2 | 75 |
| MIMAT0006363 | mml-miR-500a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0006288 | mml-miR-362-5p | 7 | ......__ | 2 | 75 |
| MIMAT0026771 | mdo-miR-1547-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007069 | oan-miR-1421l-1-3p | 7 | __...... | 2 | 75 |
| MIMAT0017311 | rno-miR-500-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005088 | ppt-miR902l-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005084 | ppt-miR902j-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020901 | dme-miR-1001-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005464 | dme-miR-iab-8-3p | 1 | __...... | 6 | 75 |
| MIMAT0004919 | hsa-miR-541-5p | 2 | ......__ | 7 | 75 |
| MIMAT0003508 | mmu-miR-501-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017258 | mmu-miR-500-5p | 7 | ......__ | 2 | 75 |
| MIMAT0003466 | mmu-miR-687 | 7 | _......_ | 2 | 75 |
| MIMAT0005798 | hsa-miR-1185-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019089 | rlcv-miR-rL1-11-5p | 8 | __...... | 3 | 75 |
| MIMAT0003116 | rno-miR-501-5p | 7 | ......__ | 2 | 75 |
| MIMAT0002873 | hsa-miR-502-5p | 6 | ......__ | 1 | 75 |
| MIMAT0002872 | hsa-miR-501-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004773 | hsa-miR-500a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0000706 | mmu-miR-362-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000705 | hsa-miR-362-5p | 7 | ......__ | 2 | 75 |
| MIMAT0020844 | dme-miR-318-5p | 1 | __...... | 6 | 75 |
| MIMAT0020843 | dme-miR-317-5p | 3 | __...... | 8 | 75 |
| MIMAT0020813 | dme-miR-124-5p | 7 | __...... | 2 | 75 |
| MIMAT0020773 | cel-miR-54-5p | 1 | _......_ | 6 | 75 |
