| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | accaccgt | 8 | ||
| MIMAT0036758 | oha-miR-181a-1-3p | 1 | ......._ | 7 | 87 |
| MIMAT0035029 | efu-miR-411 | 7 | _....... | 1 | 87 |
| MIMAT0035008 | efu-miR-181f | 1 | ......._ | 7 | 87 |
| MIMAT0029339 | lja-miR7523b | 1 | ......._ | 7 | 87 |
| MIMAT0029338 | lja-miR7523a | 1 | ......._ | 7 | 87 |
| MIMAT0027848 | mmu-miR-6973a-5p | 8 | _....... | 2 | 87 |
| MIMAT0018882 | tca-miR-3791-5p | 7 | ......._ | 1 | 87 |
| MIMAT0013712 | bmo-miR-2808a-3p | 7 | ......._ | 1 | 87 |
| MIMAT0029823 | mmu-miR-7658-3p | 1 | ......t. | 8 | 87 |
| MIMAT0024334 | mml-miR-1250 | 8 | .g...... | 1 | 87 |
| MIMAT0024235 | ggo-miR-1250 | 8 | .g...... | 1 | 87 |
| MIMAT0016175 | ppy-miR-1250 | 8 | .g...... | 1 | 87 |
| MIMAT0007976 | ptr-miR-1250 | 8 | .g...... | 1 | 87 |
| MIMAT0005902 | hsa-miR-1250-5p | 8 | .g...... | 1 | 87 |
| MIMAT0037293 | ame-miR-9888 | 7 | ......__ | 2 | 75 |
| MIMAT0036685 | oha-miR-1306-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036299 | chi-miR-876-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035295 | gsa-miR-278-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035050 | efu-miR-9323 | 3 | ......__ | 8 | 75 |
| MIMAT0034747 | eca-miR-9169 | 8 | __...... | 3 | 75 |
| MIMAT0034616 | eca-miR-9071 | 3 | _......_ | 8 | 75 |
| MIMAT0034614 | eca-miR-9069 | 7 | __...... | 2 | 75 |
| MIMAT0034172 | gra-miR8748 | 7 | _......_ | 2 | 75 |
| MIMAT0033515 | sma-miR-36b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0033053 | ppc-miR-8277-5p | 7 | __...... | 2 | 75 |
| MIMAT0031659 | bbe-miR-278-5p | 7 | _......_ | 2 | 75 |
| MIMAT0031647 | bbe-miR-216-3p | 7 | __...... | 2 | 75 |
| MIMAT0031614 | bbe-miR-2057-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030998 | hsa-miR-8071 | 6 | _......_ | 1 | 75 |
| MIMAT0030531 | prd-miR-36-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032219 | lva-miR-278-3p | 7 | _......_ | 2 | 75 |
| MIMAT0032172 | pmi-miR-278-3p | 7 | _......_ | 2 | 75 |
| MIMAT0029850 | mmu-miR-7672-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031027 | oan-miR-181a-3-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028777 | mdo-miR-7372-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028474 | mdo-miR-7254-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027472 | hsa-miR-6786-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027453 | hsa-miR-6776-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025041 | sma-miR-36a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0024960 | hme-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0024451 | mse-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0023804 | cgr-miR-181d-3p | 2 | _......_ | 7 | 75 |
| MIMAT0023051 | tur-miR-5730-3p | 6 | _......_ | 1 | 75 |
| MIMAT0023031 | tur-miR-278-3p | 7 | _......_ | 2 | 75 |
| MIMAT0022434 | ath-miR5660 | 8 | ......__ | 3 | 75 |
| MIMAT0021683 | sbi-miR5385 | 1 | ......__ | 6 | 75 |
| MIMAT0021545 | asu-miR-5347-3p | 8 | __...... | 3 | 75 |
| MIMAT0020602 | hsa-miR-1273g-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020207 | dme-miR-4976-3p | 7 | _......_ | 2 | 75 |
| MIMAT0020149 | dme-miR-4941-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019259 | oar-miR-323a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019241 | oar-miR-433-5p | 7 | __...... | 2 | 75 |
| MIMAT0019017 | hsa-miR-4483 | 8 | ......__ | 3 | 75 |
| MIMAT0018827 | tca-miR-3867-3p | 3 | __...... | 8 | 75 |
| MIMAT0018540 | ame-miR-3766 | 8 | ......__ | 3 | 75 |
| MIMAT0018538 | ame-miR-3720 | 8 | __...... | 3 | 75 |
| MIMAT0018521 | ame-miR-3751 | 7 | ......__ | 2 | 75 |
| MIMAT0016930 | isc-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0016734 | cin-miR-4137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016340 | ahy-miR3514-3p | 2 | __...... | 7 | 75 |
| MIMAT0016258 | sja-miR-36-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016215 | ppy-miR-1293 | 8 | ......__ | 3 | 75 |
| MIMAT0016116 | ppy-miR-876-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015825 | ppy-miR-323-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017756 | esi-miR3455-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017706 | aly-miR3437-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015463 | bmo-miR-3278 | 8 | ......__ | 3 | 75 |
| MIMAT0014934 | mmu-miR-3102-5p.2-5p | 6 | ......__ | 1 | 75 |
| MIMAT0014723 | api-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0014377 | cqu-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0014238 | aae-miR-278-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016944 | rlcv-miR-rL1-22-3p | 2 | __...... | 7 | 75 |
| MIMAT0017375 | ssc-miR-181d-3p | 2 | _......_ | 7 | 75 |
| MIMAT0013131 | eca-miR-323-5p | 7 | ......__ | 2 | 75 |
| MIMAT0013122 | eca-miR-876-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012985 | eca-miR-1905c | 2 | ......__ | 7 | 75 |
| MIMAT0013759 | bmo-miR-2774c | 8 | _......_ | 3 | 75 |
| MIMAT0013671 | bmo-miR-2808c | 7 | ......__ | 2 | 75 |
| MIMAT0013658 | bmo-miR-2774a | 8 | _......_ | 3 | 75 |
| MIMAT0012653 | dpu-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0013544 | cte-miR-2691-5p | 7 | __...... | 2 | 75 |
| MIMAT0010135 | bfl-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0009754 | aqu-miR-2021-3p | 7 | ......__ | 2 | 75 |
| MIMAT0009674 | spu-miR-278-3p | 7 | _......_ | 2 | 75 |
| MIMAT0009640 | sko-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0009592 | lgi-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0009538 | cte-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0019150 | bfl-miR-216-3p | 7 | __...... | 2 | 75 |
| MIMAT0009164 | bmo-miR-278-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017350 | mmu-miR-1968-3p | 1 | ......__ | 6 | 75 |
| MIMAT0019136 | mmu-miR-1306-5p | 2 | ......__ | 7 | 75 |
| MIMAT0009402 | mmu-miR-1938 | 6 | _......_ | 1 | 75 |
| MIMAT0009086 | dya-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0009029 | dwi-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0008937 | dvi-miR-278-3p | 7 | _......_ | 2 | 75 |
| MIMAT0008891 | dsi-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0008781 | dse-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0008726 | dpe-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0008676 | dmo-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0008597 | dgr-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0008530 | der-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0008470 | dan-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0008327 | ptr-miR-876 | 7 | ......__ | 2 | 75 |
| MIMAT0008012 | ptr-miR-1293 | 8 | ......__ | 3 | 75 |
| MIMAT0007764 | osa-miR1846d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006520 | mml-miR-876-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026875 | mml-miR-433-5p | 7 | __...... | 2 | 75 |
| MIMAT0006264 | mml-miR-323a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007634 | gga-miR-1732 | 1 | __...... | 6 | 75 |
| MIMAT0026763 | gga-miR-1306-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007084 | oan-miR-1421s-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007080 | oan-miR-1421q-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007074 | oan-miR-1421n-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005883 | hsa-miR-1293 | 8 | ......__ | 3 | 75 |
| MIMAT0017296 | rno-miR-181d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005166 | ppt-miR1050 | 3 | ......__ | 8 | 75 |
| MIMAT0004407 | rrv-miR-rR1-1-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004925 | hsa-miR-876-3p | 7 | ......__ | 2 | 75 |
| MIMAT0017264 | mmu-miR-181d-3p | 2 | _......_ | 7 | 75 |
| MIMAT0004240 | ath-miR823 | 8 | ......__ | 3 | 75 |
| MIMAT0004011 | sme-miR-278-3p | 7 | _......_ | 2 | 75 |
| MIMAT0003442 | rlcv-miR-rL1-12-3p | 7 | __...... | 2 | 75 |
| MIMAT0026608 | hsa-miR-181d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017192 | rno-miR-433-5p | 7 | __...... | 2 | 75 |
| MIMAT0026554 | hsa-miR-433-5p | 7 | __...... | 2 | 75 |
| MIMAT0017190 | mghv-miR-M1-6-5p | 3 | ......__ | 8 | 75 |
| MIMAT0001511 | aga-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0001482 | ame-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0001419 | mmu-miR-433-5p | 7 | __...... | 2 | 75 |
| MIMAT0001242 | dps-miR-278 | 7 | _......_ | 2 | 75 |
| MIMAT0017138 | rno-miR-181a-2-3p | 1 | ......__ | 6 | 75 |
| MIMAT0004696 | hsa-miR-323a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004638 | mmu-miR-323-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004637 | rno-miR-323-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000339 | dme-miR-278-3p | 7 | _......_ | 2 | 75 |
| MIMAT0020342 | cel-miR-259-3p | 1 | _......_ | 6 | 75 |
| MIMAT0020770 | cel-miR-41-5p | 6 | ......__ | 1 | 75 |
