| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acccttc | 7 | ||
| MIMAT0030171 | bdi-miR7722-3p | 7 | ....... | 1 | 100 |
| MIMAT0007430 | gga-miR-1570 | 7 | ....... | 1 | 100 |
| MIMAT0005080 | ppt-miR902h-3p | 8 | ....... | 2 | 100 |
| MIMAT0037192 | ata-miR528-5p | 8 | _...... | 3 | 85 |
| MIMAT0037020 | ssc-miR-9802-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035714 | mmu-miR-3154 | 8 | _...... | 3 | 85 |
| MIMAT0035298 | gsa-miR-2d-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035294 | gsa-miR-278-5p | 8 | ......_ | 3 | 85 |
| MIMAT0034989 | efu-miR-9314 | 3 | ......_ | 8 | 85 |
| MIMAT0034685 | eca-miR-9134 | 8 | _...... | 3 | 85 |
| MIMAT0034643 | eca-miR-9097 | 8 | _...... | 3 | 85 |
| MIMAT0031557 | ppe-miR8130-3p | 1 | _...... | 6 | 85 |
| MIMAT0030602 | prd-miR-235-5p | 8 | _...... | 3 | 85 |
| MIMAT0029310 | hsa-miR-7515 | 7 | _...... | 2 | 85 |
| MIMAT0029272 | mes-miR395e | 8 | _...... | 3 | 85 |
| MIMAT0028526 | mdo-miR-7276-5p | 1 | _...... | 6 | 85 |
| MIMAT0027673 | hsa-miR-6886-3p | 3 | _...... | 8 | 85 |
| MIMAT0027628 | hsa-miR-6864-5p | 8 | _...... | 3 | 85 |
| MIMAT0027565 | hsa-miR-6832-3p | 1 | ......_ | 6 | 85 |
| MIMAT0027413 | hsa-miR-6756-3p | 3 | _...... | 8 | 85 |
| MIMAT0027370 | hsa-miR-6734-3p | 1 | _...... | 6 | 85 |
| MIMAT0025529 | bta-miR-3154 | 8 | _...... | 3 | 85 |
| MIMAT0024627 | mml-miR-3154 | 8 | _...... | 3 | 85 |
| MIMAT0024608 | ptr-miR-3154 | 8 | _...... | 3 | 85 |
| MIMAT0024402 | ppy-miR-3154 | 8 | _...... | 3 | 85 |
| MIMAT0023590 | sly-miR6022 | 8 | _...... | 3 | 85 |
| MIMAT0023589 | stu-miR6022 | 8 | _...... | 3 | 85 |
| MIMAT0022183 | cel-miR-5546-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022030 | aca-miR-5412-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021856 | aca-miR-205b | 1 | _...... | 6 | 85 |
| MIMAT0020288 | ssp-miR528 | 8 | _...... | 3 | 85 |
| MIMAT0020662 | bdi-miR528-5p | 8 | _...... | 3 | 85 |
| MIMAT0027041 | hsa-miR-5088-3p | 2 | _...... | 7 | 85 |
| MIMAT0019939 | hsa-miR-4780 | 1 | ......_ | 6 | 85 |
| MIMAT0019519 | pma-miR-205b | 1 | _...... | 6 | 85 |
| MIMAT0019398 | pma-miR-22a-5p | 3 | _...... | 8 | 85 |
| MIMAT0019257 | oar-miR-1197-5p | 1 | _...... | 6 | 85 |
| MIMAT0018494 | csi-miR3952 | 7 | _...... | 2 | 85 |
| MIMAT0018913 | tca-miR-3905-5p | 7 | _...... | 2 | 85 |
| MIMAT0018170 | mghv-miR-M1-12-5p | 6 | ......_ | 1 | 85 |
| MIMAT0016483 | cin-miR-4006f-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016276 | sja-miR-2c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015999 | ppy-miR-553 | 8 | ......_ | 3 | 85 |
| MIMAT0015089 | hsa-miR-3202 | 8 | _...... | 3 | 85 |
| MIMAT0015056 | hsa-miR-3179 | 7 | _...... | 2 | 85 |
| MIMAT0015028 | hsa-miR-3154 | 8 | _...... | 3 | 85 |
| MIMAT0019201 | hsa-miR-3127-3p | 3 | _...... | 8 | 85 |
| MIMAT0014616 | tgu-miR-205 | 1 | _...... | 6 | 85 |
| MIMAT0014065 | rlcv-miR-rL1-20-5p | 8 | ......_ | 3 | 85 |
| MIMAT0014048 | sbi-miR528 | 8 | _...... | 3 | 85 |
| MIMAT0014029 | zma-miR528b-5p | 8 | _...... | 3 | 85 |
| MIMAT0014028 | zma-miR528a-5p | 8 | _...... | 3 | 85 |
| MIMAT0013732 | bmo-miR-2780b | 6 | ......_ | 1 | 85 |
| MIMAT0013669 | bmo-miR-2780a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012575 | aqc-miR395a | 8 | _...... | 3 | 85 |
| MIMAT0012574 | aqc-miR395b | 8 | _...... | 3 | 85 |
| MIMAT0013301 | mtr-miR2598 | 8 | ......_ | 3 | 85 |
| MIMAT0009699 | aqu-miR-2020-3p | 8 | _...... | 3 | 85 |
| MIMAT0002884 | osa-miR528-5p | 8 | _...... | 3 | 85 |
| MIMAT0002021 | ptc-miR395a | 8 | _...... | 3 | 85 |
| MIMAT0001164 | gga-miR-205b | 1 | _...... | 6 | 85 |
| MIMAT0000576 | rno-miR-336-5p | 3 | ......_ | 8 | 85 |
