| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | accgggg | 7 | ||
| MIMAT0028022 | mmu-miR-7059-5p | 1 | ....... | 7 | 100 |
| MIMAT0019947 | hsa-miR-4783-3p | 7 | ....... | 1 | 100 |
| MIMAT0019721 | hsa-miR-4655-5p | 2 | ....... | 8 | 100 |
| MIMAT0035259 | gsa-miR-36-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035228 | dme-miR-9382-3p | 8 | _...... | 3 | 85 |
| MIMAT0034719 | eca-miR-8908i | 8 | ......_ | 3 | 85 |
| MIMAT0033627 | sma-miR-8457-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033515 | sma-miR-36b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033467 | str-miR-37b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033459 | str-miR-8393-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033455 | str-miR-37a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033437 | str-miR-40-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033233 | ppc-miR-2235a-9-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033226 | ppc-miR-8340-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033070 | ppc-miR-8283-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033034 | ppc-miR-2235a-11-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032953 | ppc-miR-2235d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032951 | ppc-miR-2235c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032946 | ppc-miR-8243-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032913 | ppc-miR-8232-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032889 | ppc-miR-42c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032883 | ppc-miR-36-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032851 | ppc-miR-2235b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031749 | bma-miR-36a | 3 | ......_ | 8 | 85 |
| MIMAT0031417 | mmu-miR-8111 | 1 | ......_ | 6 | 85 |
| MIMAT0030813 | prd-miR-39-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030715 | prd-miR-35a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030681 | prd-miR-40-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030567 | prd-miR-37-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030557 | prd-miR-7940b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030531 | prd-miR-36-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030511 | prd-miR-35b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030286 | bdi-miR7768b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030284 | bdi-miR7768a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029941 | cbn-miR-35n | 3 | ......_ | 8 | 85 |
| MIMAT0029940 | cbn-miR-35m | 3 | ......_ | 8 | 85 |
| MIMAT0029939 | cbn-miR-35l | 3 | ......_ | 8 | 85 |
| MIMAT0029938 | cbn-miR-35k | 3 | ......_ | 8 | 85 |
| MIMAT0029937 | cbn-miR-35j | 3 | ......_ | 8 | 85 |
| MIMAT0029936 | cbn-miR-35i | 3 | ......_ | 8 | 85 |
| MIMAT0029935 | cbn-miR-35h | 3 | ......_ | 8 | 85 |
| MIMAT0029934 | cbn-miR-35g | 3 | ......_ | 8 | 85 |
| MIMAT0029933 | cbn-miR-35f | 3 | ......_ | 8 | 85 |
| MIMAT0029932 | cbn-miR-35e | 3 | ......_ | 8 | 85 |
| MIMAT0029931 | cbn-miR-35d | 3 | ......_ | 8 | 85 |
| MIMAT0029930 | cbn-miR-35c | 3 | ......_ | 8 | 85 |
| MIMAT0029929 | cbn-miR-35b | 3 | ......_ | 8 | 85 |
| MIMAT0029928 | cbn-miR-35a | 3 | ......_ | 8 | 85 |
| MIMAT0029927 | cbn-miR-36 | 3 | ......_ | 8 | 85 |
| MIMAT0029926 | cbn-miR-38 | 3 | ......_ | 8 | 85 |
| MIMAT0029925 | cbn-miR-39 | 3 | ......_ | 8 | 85 |
| MIMAT0029924 | crm-miR-35i | 3 | ......_ | 8 | 85 |
| MIMAT0029921 | crm-miR-36 | 3 | ......_ | 8 | 85 |
| MIMAT0029920 | crm-miR-35h | 3 | ......_ | 8 | 85 |
| MIMAT0029919 | cbr-miR-35g | 3 | ......_ | 8 | 85 |
| MIMAT0029918 | cbr-miR-35f | 3 | ......_ | 8 | 85 |
| MIMAT0026409 | sbi-miR6221-3p | 1 | _...... | 6 | 85 |
| MIMAT0026402 | sbi-miR6219-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027911 | mmu-miR-7003-3p | 6 | _...... | 1 | 85 |
| MIMAT0027582 | hsa-miR-6840-5p | 8 | _...... | 3 | 85 |
| MIMAT0027468 | hsa-miR-6784-5p | 2 | _...... | 7 | 85 |
| MIMAT0027427 | hsa-miR-6763-3p | 8 | _...... | 3 | 85 |
| MIMAT0025310 | prv-miR-LLT7 | 1 | _...... | 6 | 85 |
| MIMAT0025041 | sma-miR-36a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0023444 | hco-miR-40a | 3 | ......_ | 8 | 85 |
| MIMAT0023430 | hco-miR-40d | 3 | ......_ | 8 | 85 |
| MIMAT0023429 | hco-miR-40c | 3 | ......_ | 8 | 85 |
| MIMAT0023323 | hco-miR-40b | 3 | ......_ | 8 | 85 |
| MIMAT0023050 | tur-miR-5730-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022290 | hsa-miR-5587-3p | 7 | _...... | 2 | 85 |
| MIMAT0021549 | asu-miR-5348-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021547 | asu-miR-36f-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021448 | asu-miR-36e-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021446 | asu-miR-36d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021444 | asu-miR-36c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021442 | asu-miR-36b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021440 | asu-miR-36a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021388 | rmi-miR-5316b | 3 | ......_ | 8 | 85 |
| MIMAT0021082 | hsa-miR-5090 | 1 | _...... | 6 | 85 |
| MIMAT0020498 | bfl-miR-4903 | 8 | _...... | 3 | 85 |
| MIMAT0020115 | bfl-miR-4872b | 3 | _...... | 8 | 85 |
| MIMAT0019807 | hsa-miR-4707-5p | 7 | _...... | 2 | 85 |
| MIMAT0019574 | pma-miR-4544-3p | 2 | _...... | 7 | 85 |
| MIMAT0019071 | hsa-miR-4532 | 6 | _...... | 1 | 85 |
| MIMAT0019071 | hsa-miR-4532 | 3 | _...... | 8 | 85 |
| MIMAT0018883 | tca-miR-3791-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018570 | ame-miR-3791 | 3 | ......_ | 8 | 85 |
| MIMAT0016595 | cin-miR-4053-5p | 3 | _...... | 8 | 85 |
| MIMAT0016258 | sja-miR-36-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014693 | hsv1-miR-H15 | 8 | _...... | 3 | 85 |
| MIMAT0014549 | tgu-miR-2992 | 6 | _...... | 1 | 85 |
| MIMAT0013848 | bta-miR-2890 | 7 | _...... | 2 | 85 |
| MIMAT0013847 | bta-miR-2889 | 8 | _...... | 3 | 85 |
| MIMAT0012600 | bmo-miR-2724 | 8 | _...... | 3 | 85 |
| MIMAT0012598 | hsv1-miR-H8-3p | 8 | _...... | 3 | 85 |
| MIMAT0013530 | cte-miR-36 | 3 | ......_ | 8 | 85 |
| MIMAT0011808 | bta-miR-2299-3p | 2 | _...... | 7 | 85 |
| MIMAT0011720 | ppc-miR-2251a | 3 | ......_ | 8 | 85 |
| MIMAT0011714 | ppc-miR-38 | 3 | ......_ | 8 | 85 |
| MIMAT0011690 | ppc-miR-2240a | 3 | ......_ | 8 | 85 |
| MIMAT0011681 | ppc-miR-2235a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011654 | ppc-miR-42b | 3 | ......_ | 8 | 85 |
| MIMAT0011647 | ppc-miR-37 | 3 | ......_ | 8 | 85 |
| MIMAT0011641 | ppc-miR-42a | 3 | ......_ | 8 | 85 |
| MIMAT0011605 | crm-miR-35g | 3 | ......_ | 8 | 85 |
| MIMAT0011603 | crm-miR-38 | 3 | ......_ | 8 | 85 |
| MIMAT0011532 | crm-miR-42 | 3 | ......_ | 8 | 85 |
| MIMAT0011514 | crm-miR-35f | 3 | ......_ | 8 | 85 |
| MIMAT0011513 | crm-miR-35e | 3 | ......_ | 8 | 85 |
| MIMAT0011739 | crm-miR-35d | 3 | ......_ | 8 | 85 |
| MIMAT0011512 | crm-miR-35c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011511 | crm-miR-35b | 3 | ......_ | 8 | 85 |
| MIMAT0011510 | crm-miR-35a | 3 | ......_ | 8 | 85 |
| MIMAT0011506 | crm-miR-39 | 3 | ......_ | 8 | 85 |
| MIMAT0011505 | crm-miR-40 | 3 | ......_ | 8 | 85 |
| MIMAT0011504 | crm-miR-41 | 3 | ......_ | 8 | 85 |
| MIMAT0011489 | cbr-miR-41b | 3 | ......_ | 8 | 85 |
| MIMAT0011483 | cbr-miR-35b | 3 | ......_ | 8 | 85 |
| MIMAT0011470 | cbr-miR-35d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011468 | cbr-miR-35e | 3 | ......_ | 8 | 85 |
| MIMAT0011467 | cbr-miR-35c | 3 | ......_ | 8 | 85 |
| MIMAT0011261 | sme-miR-36c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011242 | sme-miR-36b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007196 | oan-miR-1394 | 2 | _...... | 7 | 85 |
| MIMAT0022721 | hsa-miR-1247-3p | 6 | _...... | 1 | 85 |
| MIMAT0005395 | cre-miR1151b-5p | 2 | _...... | 7 | 85 |
| MIMAT0005393 | cre-miR1151a-5p | 2 | _...... | 7 | 85 |
| MIMAT0017296 | rno-miR-181d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003982 | sme-miR-36a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004824 | mmu-miR-673-3p | 2 | _...... | 7 | 85 |
| MIMAT0026608 | hsa-miR-181d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0001318 | cbr-miR-41a | 3 | ......_ | 8 | 85 |
| MIMAT0001317 | cbr-miR-40 | 3 | ......_ | 8 | 85 |
| MIMAT0001316 | cbr-miR-39 | 3 | ......_ | 8 | 85 |
| MIMAT0001315 | cbr-miR-38 | 3 | ......_ | 8 | 85 |
| MIMAT0001314 | cbr-miR-36 | 3 | ......_ | 8 | 85 |
| MIMAT0001313 | cbr-miR-35a | 3 | ......_ | 8 | 85 |
| MIMAT0000013 | cel-miR-42-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000012 | cel-miR-41-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000011 | cel-miR-40-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000010 | cel-miR-39-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000009 | cel-miR-38-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000008 | cel-miR-37-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000007 | cel-miR-36-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000006 | cel-miR-35-3p | 3 | ......_ | 8 | 85 |
