| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | accgtgtt | 8 | ||
| MIMAT0022684 | hvsa-miR-HSUR4-5p | 1 | ........ | 8 | 100 |
| MIMAT0032900 | ppc-miR-8228-5p | 2 | ......._ | 8 | 87 |
| MIMAT0031530 | ppe-miR7122b-3p | 1 | _....... | 7 | 87 |
| MIMAT0031528 | ppe-miR7122a-3p | 2 | _....... | 8 | 87 |
| MIMAT0007394 | gma-miR1532 | 8 | .g...... | 1 | 87 |
| MIMAT0037283 | ame-miR-9879 | 3 | ......__ | 8 | 75 |
| MIMAT0037243 | ata-miR164c-3p | 3 | __...... | 8 | 75 |
| MIMAT0036694 | oha-miR-132-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036669 | oha-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0035869 | bra-miR164c-3p | 3 | __...... | 8 | 75 |
| MIMAT0035867 | bra-miR164d-3p | 3 | __...... | 8 | 75 |
| MIMAT0035865 | bra-miR164b-3p | 3 | __...... | 8 | 75 |
| MIMAT0034747 | eca-miR-9169 | 7 | ......__ | 2 | 75 |
| MIMAT0034614 | eca-miR-9069 | 6 | ......__ | 1 | 75 |
| MIMAT0033976 | sly-miR164b-3p | 3 | __...... | 8 | 75 |
| MIMAT0033222 | ppc-miR-8338-2-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032334 | ssa-miR-132-4-5p | 1 | ......__ | 6 | 75 |
| MIMAT0032333 | ssa-miR-132-3-5p | 1 | ......__ | 6 | 75 |
| MIMAT0032331 | ssa-miR-132-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031647 | bbe-miR-216-3p | 6 | ......__ | 1 | 75 |
| MIMAT0029886 | mmu-miR-7683-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029405 | ipu-miR-132a | 1 | ......__ | 6 | 75 |
| MIMAT0029354 | lja-miR7531 | 1 | __...... | 6 | 75 |
| MIMAT0028168 | hcmv-miR-US29-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025430 | pol-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0027328 | ppe-miR398b | 1 | __...... | 6 | 75 |
| MIMAT0023835 | cgr-miR-1973 | 3 | ......__ | 8 | 75 |
| MIMAT0023758 | cgr-miR-132-5p | 1 | ......__ | 6 | 75 |
| MIMAT0023678 | ame-miR-6054 | 6 | ......__ | 1 | 75 |
| MIMAT0022689 | ola-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0023088 | tur-miR-124-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0022180 | osa-miR5544 | 8 | __...... | 3 | 75 |
| MIMAT0021745 | aca-miR-132-5p | 1 | ......__ | 6 | 75 |
| MIMAT0021685 | sbi-miR5387a | 7 | __...... | 2 | 75 |
| MIMAT0019681 | osa-miR812o-5p | 1 | __...... | 6 | 75 |
| MIMAT0019444 | pma-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0018986 | hsa-miR-4462 | 8 | _......_ | 3 | 75 |
| MIMAT0018679 | tca-miR-3825-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016816 | cin-miR-4197-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016670 | cin-miR-4092-5p | 1 | __...... | 6 | 75 |
| MIMAT0016044 | ppy-miR-602 | 7 | _......_ | 2 | 75 |
| MIMAT0017454 | aly-miR164c-3p | 3 | __...... | 8 | 75 |
| MIMAT0014795 | api-miR-3053 | 7 | ......__ | 2 | 75 |
| MIMAT0014630 | tgu-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0015372 | aae-miR-263a-3p | 1 | __...... | 6 | 75 |
| MIMAT0014049 | osa-miR2918 | 3 | _......_ | 8 | 75 |
| MIMAT0012808 | ptr-miR-602 | 7 | _......_ | 2 | 75 |
| MIMAT0012201 | dme-miR-2493-3p | 1 | _......_ | 6 | 75 |
| MIMAT0011796 | bta-miR-2289 | 2 | __...... | 7 | 75 |
| MIMAT0009697 | aqu-miR-2019-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019150 | bfl-miR-216-3p | 6 | ......__ | 1 | 75 |
| MIMAT0009448 | hsa-miR-1973 | 1 | ......__ | 6 | 75 |
| MIMAT0019123 | tca-miR-275-5p | 1 | __...... | 6 | 75 |
| MIMAT0026816 | mml-miR-132-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007634 | gga-miR-1732 | 2 | ......__ | 7 | 75 |
| MIMAT0015257 | cin-miR-124-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0007113 | oan-miR-124a-5p | 1 | __...... | 6 | 75 |
| MIMAT0026693 | mdo-miR-132-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003270 | hsa-miR-602 | 7 | _......_ | 2 | 75 |
| MIMAT0003403 | dre-miR-132-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031962 | dre-miR-124-6-5p | 1 | __...... | 6 | 75 |
| MIMAT0031960 | dre-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0004756 | hcmv-miR-US33-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015136 | zma-miR164a-3p | 3 | __...... | 8 | 75 |
| MIMAT0031916 | ath-miR164c-3p | 3 | __...... | 8 | 75 |
| MIMAT0017123 | rno-miR-132-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004728 | rno-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0004594 | hsa-miR-132-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004591 | hsa-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0016984 | mmu-miR-132-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004527 | mmu-miR-124-5p | 1 | __...... | 6 | 75 |
