| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acttactt | 8 | ||
| MIMAT0035182 | efu-miR-9365 | 1 | _....... | 7 | 87 |
| MIMAT0027248 | pgi-miR6135g | 8 | ......._ | 2 | 87 |
| MIMAT0027247 | pgi-miR6135f | 8 | ......._ | 2 | 87 |
| MIMAT0016494 | cin-miR-1502d-3p | 1 | ......._ | 7 | 87 |
| MIMAT0015611 | bmo-miR-3406-5p | 8 | ......._ | 2 | 87 |
| MIMAT0009732 | lgi-miR-1990 | 7 | ......._ | 1 | 87 |
| MIMAT0009718 | hru-miR-1990 | 7 | ......._ | 1 | 87 |
| MIMAT0007107 | oan-miR-1377 | 8 | ......._ | 2 | 87 |
| MIMAT0033466 | str-miR-37b-5p | 8 | .a...... | 1 | 87 |
| MIMAT0027249 | pgi-miR6135h | 8 | ......g. | 1 | 87 |
| MIMAT0012311 | dps-miR-2523 | 8 | .g...... | 1 | 87 |
| MIMAT0036378 | gma-miR9750 | 7 | ......__ | 2 | 75 |
| MIMAT0035817 | bra-miR156a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035703 | hsa-miR-548bb-5p | 8 | __...... | 3 | 75 |
| MIMAT0035599 | dvi-miR-987-5p | 8 | __...... | 3 | 75 |
| MIMAT0035556 | dvi-miR-1010-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035454 | sly-miR156e-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035371 | nve-miR-9415 | 3 | ......__ | 8 | 75 |
| MIMAT0035342 | gsa-miR-9398-5p | 7 | __...... | 2 | 75 |
| MIMAT0035338 | gsa-miR-9396-5p | 6 | ......__ | 1 | 75 |
| MIMAT0034958 | efu-miR-9297 | 3 | __...... | 8 | 75 |
| MIMAT0034031 | gra-miR8661 | 3 | __...... | 8 | 75 |
| MIMAT0033818 | pxy-miR-2767 | 7 | __...... | 2 | 75 |
| MIMAT0033624 | sma-miR-8456-5p | 1 | __...... | 6 | 75 |
| MIMAT0033586 | sma-miR-8441-5p | 7 | ......__ | 2 | 75 |
| MIMAT0033541 | sma-miR-8418-3p | 8 | __...... | 3 | 75 |
| MIMAT0031606 | bbe-miR-200a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031350 | stu-miR156g-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030758 | prd-miR-7947-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030700 | prd-miR-7926-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030691 | prd-miR-7923-3p | 7 | __...... | 2 | 75 |
| MIMAT0030604 | prd-miR-4816-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030230 | bdi-miR7745-5p | 6 | _......_ | 1 | 75 |
| MIMAT0030163 | bdi-miR5049-3p | 7 | __...... | 2 | 75 |
| MIMAT0029656 | cbn-miR-7617 | 6 | ......__ | 1 | 75 |
| MIMAT0029618 | crm-miR-7601 | 6 | ......__ | 1 | 75 |
| MIMAT0029141 | ghr-miR7495b | 1 | __...... | 6 | 75 |
| MIMAT0029140 | ghr-miR7495a | 1 | __...... | 6 | 75 |
| MIMAT0029112 | gga-miR-7479-5p | 7 | _......_ | 2 | 75 |
| MIMAT0029081 | gga-miR-7463-3p | 2 | __...... | 7 | 75 |
| MIMAT0028865 | mdo-miR-7386n-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028332 | mml-miR-548j-5p | 8 | __...... | 3 | 75 |
| MIMAT0028256 | mml-miR-548h-5p | 8 | __...... | 3 | 75 |
| MIMAT0026401 | sbi-miR5568c-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027842 | mmu-miR-6970-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025683 | gga-miR-6590-3p | 1 | __...... | 6 | 75 |
| MIMAT0025452 | hsa-miR-548ay-5p | 8 | __...... | 3 | 75 |
| MIMAT0025126 | mmu-miR-6380 | 7 | ......__ | 2 | 75 |
| MIMAT0024957 | hme-miR-2767 | 7 | __...... | 2 | 75 |
| MIMAT0027245 | pgi-miR6135e-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027244 | pgi-miR6135d | 8 | ......__ | 3 | 75 |
| MIMAT0027243 | pgi-miR6135c | 8 | ......__ | 3 | 75 |
| MIMAT0027242 | pgi-miR6135b | 8 | ......__ | 3 | 75 |
| MIMAT0027241 | pgi-miR6135a | 8 | ......__ | 3 | 75 |
| MIMAT0024488 | mse-miR-2767 | 7 | __...... | 2 | 75 |
| MIMAT0024377 | ppy-miR-548h | 8 | __...... | 3 | 75 |
| MIMAT0024373 | ppy-miR-548a | 8 | __...... | 3 | 75 |
| MIMAT0024278 | ggo-miR-548a | 8 | __...... | 3 | 75 |
| MIMAT0024054 | ptr-miR-548o | 8 | __...... | 3 | 75 |
| MIMAT0023445 | hco-miR-5928c | 8 | __...... | 3 | 75 |
| MIMAT0023438 | hco-miR-5928b | 8 | __...... | 3 | 75 |
| MIMAT0022474 | hsa-miR-548ax | 8 | __...... | 3 | 75 |
| MIMAT0022361 | mmu-miR-5617-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022291 | hsa-miR-548au-5p | 8 | __...... | 3 | 75 |
| MIMAT0022267 | hsa-miR-548as-5p | 8 | __...... | 3 | 75 |
| MIMAT0022265 | hsa-miR-548ar-5p | 8 | __...... | 3 | 75 |
| MIMAT0022263 | hsa-miR-548aq-5p | 8 | __...... | 3 | 75 |
| MIMAT0021690 | aca-miR-5392 | 3 | __...... | 8 | 75 |
| MIMAT0021573 | asu-miR-5356a-3p | 3 | __...... | 8 | 75 |
| MIMAT0021416 | asu-lin-4-3p | 8 | _......_ | 3 | 75 |
| MIMAT0021037 | hsa-miR-548ap-5p | 8 | __...... | 3 | 75 |
| MIMAT0021029 | hsa-miR-548ao-5p | 8 | __...... | 3 | 75 |
| MIMAT0020205 | dme-miR-4975-5p | 2 | __...... | 7 | 75 |
| MIMAT0020130 | cel-miR-4924 | 6 | ......__ | 1 | 75 |
| MIMAT0020029 | sko-miR-4824 | 3 | ......__ | 8 | 75 |
| MIMAT0020005 | cel-miR-4816-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019993 | cel-miR-4809-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019988 | cel-miR-4806-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019310 | oar-miR-668-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022740 | hsa-miR-548am-5p | 8 | __...... | 3 | 75 |
| MIMAT0019013 | hsa-miR-548ak | 8 | __...... | 3 | 75 |
| MIMAT0032115 | hsa-miR-548ae-5p | 8 | __...... | 3 | 75 |
| MIMAT0032114 | hsa-miR-548ad-5p | 8 | __...... | 3 | 75 |
| MIMAT0018928 | hsa-miR-548ab | 8 | __...... | 3 | 75 |
| MIMAT0022738 | hsa-miR-548o-5p | 8 | __...... | 3 | 75 |
| MIMAT0018445 | hsa-miR-550b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018354 | hsa-miR-548y | 8 | __...... | 3 | 75 |
| MIMAT0018664 | tca-miR-3811e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0018137 | pab-miR3705 | 6 | ......__ | 1 | 75 |
| MIMAT0016542 | cin-miR-4026-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016516 | cin-miR-4013b-5p | 1 | __...... | 6 | 75 |
| MIMAT0016006 | ppy-miR-559 | 8 | __...... | 3 | 75 |
| MIMAT0017410 | aly-miR156g-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017406 | aly-miR156e-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015555 | bmo-miR-3369 | 2 | ......__ | 7 | 75 |
| MIMAT0015060 | hsa-miR-548w | 8 | __...... | 3 | 75 |
| MIMAT0014649 | tgu-miR-200b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016957 | rlcv-miR-rL1-32-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013643 | bmo-miR-2767 | 7 | __...... | 2 | 75 |
| MIMAT0013546 | cte-miR-1990a | 7 | ......__ | 2 | 75 |
| MIMAT0012521 | dsi-miR-2494-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012512 | dsi-miR-2579 | 6 | ......__ | 1 | 75 |
| MIMAT0012463 | dsi-miR-1010-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012433 | dsi-miR-987-5p | 8 | __...... | 3 | 75 |
| MIMAT0012358 | dps-miR-2549-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012324 | dps-miR-2535-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012273 | dps-miR-1010-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012235 | dps-miR-987-5p | 8 | __...... | 3 | 75 |
| MIMAT0012216 | dme-miR-2501-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012202 | dme-miR-2494-5p | 6 | ......__ | 1 | 75 |
| MIMAT0010036 | mtr-miR2087-5p | 7 | __...... | 2 | 75 |
| MIMAT0008269 | ptr-miR-600 | 1 | ......__ | 6 | 75 |
| MIMAT0008240 | ptr-miR-559 | 8 | __...... | 3 | 75 |
| MIMAT0008224 | ptr-miR-548j | 8 | __...... | 3 | 75 |
| MIMAT0008223 | ptr-miR-548i | 8 | __...... | 3 | 75 |
| MIMAT0008222 | ptr-miR-548h | 8 | __...... | 3 | 75 |
| MIMAT0006143 | mdo-miR-340-5p | 6 | __...... | 1 | 75 |
| MIMAT0005935 | hsa-miR-548i | 8 | __...... | 3 | 75 |
| MIMAT0005928 | hsa-miR-548h-5p | 8 | __...... | 3 | 75 |
| MIMAT0005875 | hsa-miR-548j-5p | 8 | __...... | 3 | 75 |
| MIMAT0005141 | ppt-miR1034 | 1 | __...... | 6 | 75 |
| MIMAT0020356 | cel-miR-1020-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005504 | dme-miR-987-5p | 8 | __...... | 3 | 75 |
| MIMAT0020879 | dme-miR-982-3p | 1 | __...... | 6 | 75 |
| MIMAT0026724 | mtr-miR156c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026700 | mdo-miR-200b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005448 | mmu-miR-467b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017237 | mmu-miR-668-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017233 | mmu-miR-216b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004812 | hsa-miR-548d-5p | 8 | __...... | 3 | 75 |
| MIMAT0004806 | hsa-miR-548c-5p | 8 | __...... | 3 | 75 |
| MIMAT0003268 | hsa-miR-600 | 1 | ......__ | 6 | 75 |
| MIMAT0004803 | hsa-miR-548a-5p | 8 | __...... | 3 | 75 |
| MIMAT0004798 | hsa-miR-548b-5p | 8 | __...... | 3 | 75 |
| MIMAT0003223 | hsa-miR-559 | 8 | __...... | 3 | 75 |
| MIMAT0026534 | gga-miR-200b-5p | 2 | _......_ | 7 | 75 |
