| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agatgaac | 8 | ||
| MIMAT0018750 | tca-miR-309a-5p | 1 | ........ | 8 | 100 |
| MIMAT0035658 | bra-miR9408-3p | 8 | ......._ | 2 | 87 |
| MIMAT0034940 | efu-miR-9286 | 8 | ......._ | 2 | 87 |
| MIMAT0021070 | gma-miR5041-5p | 8 | ......._ | 2 | 87 |
| MIMAT0016735 | cin-miR-4138-5p | 2 | ......._ | 8 | 87 |
| MIMAT0016540 | cin-miR-4024-3p | 8 | ......._ | 2 | 87 |
| MIMAT0006424 | mml-miR-556-5p | 1 | _....... | 7 | 87 |
| MIMAT0028480 | mdo-miR-7257-5p | 1 | .c...... | 8 | 87 |
| MIMAT0023549 | ame-miR-6005-5p | 1 | .t...... | 8 | 87 |
| MIMAT0037154 | ata-miR9772b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0037106 | ata-miR9772a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036982 | tae-miR9772 | 3 | ......__ | 8 | 75 |
| MIMAT0036724 | oha-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036476 | tch-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035964 | chi-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035503 | bdi-miR9494 | 6 | _......_ | 1 | 75 |
| MIMAT0035363 | bol-miR9408 | 8 | _......_ | 3 | 75 |
| MIMAT0035206 | dme-miR-9371-3p | 8 | _......_ | 3 | 75 |
| MIMAT0034971 | efu-miR-513 | 1 | __...... | 6 | 75 |
| MIMAT0034916 | efu-miR-9278 | 3 | _......_ | 8 | 75 |
| MIMAT0034615 | eca-miR-9070 | 3 | ......__ | 8 | 75 |
| MIMAT0034167 | gra-miR167c | 3 | ......__ | 8 | 75 |
| MIMAT0034091 | gra-miR8705 | 7 | __...... | 2 | 75 |
| MIMAT0034073 | gra-miR8693 | 3 | _......_ | 8 | 75 |
| MIMAT0034064 | gra-miR8691 | 1 | ......__ | 6 | 75 |
| MIMAT0033686 | sma-miR-8482-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033183 | ppc-miR-8321-3p | 8 | __...... | 3 | 75 |
| MIMAT0032389 | ssa-miR-153a-2-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032366 | ssa-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031708 | bbe-miR-4891-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031549 | ppe-miR5225-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031516 | ppe-miR827 | 3 | ......__ | 8 | 75 |
| MIMAT0031273 | stu-miR827-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031236 | stu-miR5304-3p | 1 | ......__ | 6 | 75 |
| MIMAT0030932 | stu-miR8028-3p | 6 | __...... | 1 | 75 |
| MIMAT0030900 | stu-miR1886g-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030770 | prd-miR-7950a-5p | 8 | __...... | 3 | 75 |
| MIMAT0030712 | prd-miR-7950c-5p | 8 | __...... | 3 | 75 |
| MIMAT0030581 | prd-miR-7895-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030032 | oar-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0029996 | mtr-miR7698-5p | 8 | _......_ | 3 | 75 |
| MIMAT0029778 | cbn-miR-77 | 6 | _......_ | 1 | 75 |
| MIMAT0029420 | ipu-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0031147 | aja-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0029302 | mes-miR827 | 3 | ......__ | 8 | 75 |
| MIMAT0028577 | mdo-miR-7296-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028194 | dev-miR-D19-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028174 | dev-miR-D5-5p | 8 | ......__ | 3 | 75 |
| MIMAT0026224 | ccr-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0026028 | mdm-miR827 | 3 | ......__ | 8 | 75 |
| MIMAT0027837 | mmu-miR-6967-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027777 | mmu-miR-6938-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027607 | hsa-miR-6853-3p | 7 | __...... | 2 | 75 |
| MIMAT0025728 | gga-miR-6632-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025689 | gga-miR-6595-5p | 3 | ......__ | 8 | 75 |
| MIMAT0024725 | nta-miR827 | 3 | ......__ | 8 | 75 |
| MIMAT0023772 | cgr-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0023713 | hsa-miR-6088 | 3 | ......__ | 8 | 75 |
| MIMAT0023478 | hco-miR-5971 | 3 | ......__ | 8 | 75 |
| MIMAT0023363 | hco-miR-5908-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022668 | ola-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0022432 | ath-miR5659 | 2 | _......_ | 7 | 75 |
| MIMAT0022164 | osa-miR5529 | 8 | _......_ | 3 | 75 |
| MIMAT0021770 | aca-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021359 | mtr-miR5293 | 1 | _......_ | 6 | 75 |
| MIMAT0021251 | mtr-miR5253 | 1 | _......_ | 6 | 75 |
| MIMAT0020756 | bdi-miR5199 | 7 | __...... | 2 | 75 |
| MIMAT0020279 | ssp-miR827 | 3 | ......__ | 8 | 75 |
| MIMAT0020703 | bdi-miR827-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020188 | dme-miR-4965-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020480 | bfl-miR-4891-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020449 | tcc-miR827 | 3 | ......__ | 8 | 75 |
| MIMAT0019951 | hsa-miR-1245b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019924 | hsa-miR-4770 | 3 | ......__ | 8 | 75 |
| MIMAT0019473 | pma-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018485 | csi-miR827 | 3 | ......__ | 8 | 75 |
| MIMAT0018901 | tca-miR-3898-3p | 2 | __...... | 7 | 75 |
| MIMAT0016804 | cin-miR-4186-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017739 | ath-miR774b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017699 | aly-miR774b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017608 | aly-miR827-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015401 | bmo-miR-3221 | 8 | ......__ | 3 | 75 |
| MIMAT0014677 | hma-miR-3009 | 7 | _......_ | 2 | 75 |
| MIMAT0014343 | ghr-miR827c | 3 | ......__ | 8 | 75 |
| MIMAT0014342 | ghr-miR827b | 3 | ......__ | 8 | 75 |
| MIMAT0014341 | ghr-miR827a | 3 | ......__ | 8 | 75 |
| MIMAT0019186 | rlcv-miR-rL1-18-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014031 | zma-miR827-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013879 | ssc-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013063 | eca-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0012876 | hvt-miR-H11 | 3 | _......_ | 8 | 75 |
| MIMAT0013475 | mtr-miR2668 | 6 | _......_ | 1 | 75 |
| MIMAT0011507 | crm-miR-77 | 6 | _......_ | 1 | 75 |
| MIMAT0011454 | cel-miR-2209b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0012140 | sme-miR-1993-5p | 2 | _......_ | 7 | 75 |
| MIMAT0009981 | osa-miR827 | 3 | ......__ | 8 | 75 |
| MIMAT0009233 | bta-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0007960 | ptr-miR-1206 | 7 | __...... | 2 | 75 |
| MIMAT0012129 | ath-miR1886.2 | 3 | ......__ | 8 | 75 |
| MIMAT0007834 | osa-miR1877 | 1 | ......__ | 6 | 75 |
| MIMAT0006682 | cfa-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0006201 | mml-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007619 | gga-miR-1721 | 3 | ......__ | 8 | 75 |
| MIMAT0007616 | gga-miR-1719 | 3 | ......__ | 8 | 75 |
| MIMAT0007605 | gga-miR-1710 | 6 | ......__ | 1 | 75 |
| MIMAT0006003 | ptc-miR827 | 3 | ......__ | 8 | 75 |
| MIMAT0007144 | oan-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007036 | oan-miR-1371 | 2 | ......__ | 7 | 75 |
| MIMAT0005870 | hsa-miR-1206 | 7 | __...... | 2 | 75 |
| MIMAT0004358 | ppt-miR419 | 2 | _......_ | 7 | 75 |
| MIMAT0004243 | ath-miR827 | 3 | ......__ | 8 | 75 |
| MIMAT0004113 | mdo-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003686 | xtr-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0002261 | ppa-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0002260 | lla-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0002259 | ppy-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0002258 | ggo-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0002257 | ptr-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0001840 | dre-miR-143 | 3 | ......__ | 8 | 75 |
| MIMAT0001636 | hsa-miR-452-3p | 7 | ......__ | 2 | 75 |
| MIMAT0001335 | osa-miR419 | 2 | _......_ | 7 | 75 |
| MIMAT0001322 | ath-miR414 | 6 | ......__ | 1 | 75 |
| MIMAT0000849 | rno-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000485 | cbr-miR-77 | 6 | _......_ | 1 | 75 |
| MIMAT0000435 | hsa-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000247 | mmu-miR-143-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000049 | cel-miR-77-3p | 6 | _......_ | 1 | 75 |
