| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agatggc | 7 | ||
| MIMAT0031393 | mmu-miR-8092 | 7 | ....... | 1 | 100 |
| MIMAT0022141 | osa-miR5508 | 2 | ....... | 8 | 100 |
| MIMAT0016960 | rlcv-miR-rL1-34-5p | 2 | ....... | 8 | 100 |
| MIMAT0035812 | tae-miR9666b-5p | 6 | _...... | 1 | 85 |
| MIMAT0035784 | tae-miR9666c-5p | 6 | _...... | 1 | 85 |
| MIMAT0035179 | efu-miR-8915 | 3 | _...... | 8 | 85 |
| MIMAT0034968 | efu-miR-9300 | 8 | _...... | 3 | 85 |
| MIMAT0034606 | eca-miR-9061 | 2 | _...... | 7 | 85 |
| MIMAT0034592 | eca-miR-9048 | 6 | ......_ | 1 | 85 |
| MIMAT0033951 | atr-miR2950 | 8 | ......_ | 3 | 85 |
| MIMAT0033859 | atr-miR8576 | 7 | _...... | 2 | 85 |
| MIMAT0033366 | str-miR-8371-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030972 | stu-miR8048-3p | 1 | ......_ | 6 | 85 |
| MIMAT0030402 | ptc-miR7821 | 1 | ......_ | 6 | 85 |
| MIMAT0030308 | bdi-miR7777-3p.2 | 3 | ......_ | 8 | 85 |
| MIMAT0030228 | bdi-miR7744-5p | 3 | _...... | 8 | 85 |
| MIMAT0029840 | mmu-miR-7667-5p | 8 | _...... | 3 | 85 |
| MIMAT0029309 | mes-miR2950 | 8 | ......_ | 3 | 85 |
| MIMAT0029074 | gga-miR-7460-5p | 1 | _...... | 6 | 85 |
| MIMAT0028507 | mdo-miR-7268-3p | 3 | _...... | 8 | 85 |
| MIMAT0028446 | mmu-miR-7239-5p | 6 | _...... | 1 | 85 |
| MIMAT0025795 | gga-miR-6689-3p | 2 | _...... | 7 | 85 |
| MIMAT0025716 | gga-miR-6620-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025652 | gga-miR-6572-3p | 1 | ......_ | 6 | 85 |
| MIMAT0024787 | hbr-miR482a | 1 | ......_ | 6 | 85 |
| MIMAT0022337 | cin-miR-5605-5p | 8 | ......_ | 3 | 85 |
| MIMAT0022307 | cel-miR-5593-5p | 1 | _...... | 6 | 85 |
| MIMAT0020601 | hsa-miR-1273f | 3 | ......_ | 8 | 85 |
| MIMAT0022982 | gma-miR2118b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022981 | gma-miR2118a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020173 | dme-miR-4956-5p | 2 | _...... | 7 | 85 |
| MIMAT0019736 | hsa-miR-4662b | 3 | ......_ | 8 | 85 |
| MIMAT0019709 | hsa-miR-4647 | 3 | ......_ | 8 | 85 |
| MIMAT0019626 | pma-miR-4593 | 7 | _...... | 2 | 85 |
| MIMAT0019236 | hsa-miR-4529-5p | 8 | _...... | 3 | 85 |
| MIMAT0018941 | hsa-miR-4426 | 3 | ......_ | 8 | 85 |
| MIMAT0018009 | vvi-miR2950-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017630 | aly-miR844-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017384 | ssc-miR-432-3p | 3 | _...... | 8 | 85 |
| MIMAT0013751 | bmo-miR-2837 | 1 | ......_ | 6 | 85 |
| MIMAT0011981 | bta-miR-2417 | 1 | ......_ | 6 | 85 |
| MIMAT0010058 | osa-miR2097-5p | 3 | ......_ | 8 | 85 |
| MIMAT0009126 | pta-miR1309 | 2 | _...... | 7 | 85 |
| MIMAT0026874 | mml-miR-432-3p | 3 | _...... | 8 | 85 |
