| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agcagtc | 7 | ||
| MIMAT0033186 | ppc-miR-8245b-5p | 8 | ....... | 2 | 100 |
| MIMAT0028428 | mmu-miR-7230-5p | 8 | ....... | 2 | 100 |
| MIMAT0023557 | tca-miR-6008-5p | 7 | ....... | 1 | 100 |
| MIMAT0023510 | hhv6b-miR-Ro6-1-5p | 2 | ....... | 8 | 100 |
| MIMAT0016906 | hsa-miR-4274 | 2 | ....... | 8 | 100 |
| MIMAT0007427 | gga-miR-1567 | 7 | ....... | 1 | 100 |
| MIMAT0037167 | ata-miR169i-3p | 2 | _...... | 7 | 85 |
| MIMAT0036932 | oha-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0036608 | tch-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0036306 | chi-miR-93-3p | 6 | ......_ | 1 | 85 |
| MIMAT0036242 | chi-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0035775 | tae-miR9664-3p | 3 | _...... | 8 | 85 |
| MIMAT0035313 | gsa-miR-1992-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035085 | efu-miR-455 | 3 | _...... | 8 | 85 |
| MIMAT0034836 | efu-miR-9231 | 1 | _...... | 6 | 85 |
| MIMAT0034304 | cfa-miR-8814 | 3 | ......_ | 8 | 85 |
| MIMAT0032785 | cel-miR-8186-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032778 | ath-miR8179 | 7 | _...... | 2 | 85 |
| MIMAT0032644 | ssa-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0031629 | bbe-miR-2066-3p | 6 | ......_ | 1 | 85 |
| MIMAT0031364 | stu-miR169c-3p | 1 | _...... | 6 | 85 |
| MIMAT0031362 | stu-miR169b-3p | 1 | _...... | 6 | 85 |
| MIMAT0031360 | stu-miR169a-3p | 1 | _...... | 6 | 85 |
| MIMAT0029875 | mmu-miR-7680-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028793 | mdo-miR-7373a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028274 | mml-miR-7170-5p | 8 | _...... | 3 | 85 |
| MIMAT0027953 | mmu-miR-7024-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025451 | hsa-miR-6499-3p | 1 | ......_ | 6 | 85 |
| MIMAT0024222 | ggo-miR-455 | 1 | _...... | 6 | 85 |
| MIMAT0024014 | cgr-miR-93-3p | 6 | ......_ | 1 | 85 |
| MIMAT0023965 | cgr-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0022608 | ola-miR-455-3p | 2 | _...... | 7 | 85 |
| MIMAT0022345 | cin-miR-5609-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021965 | aca-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0027071 | bdi-miR169h-3p | 2 | _...... | 7 | 85 |
| MIMAT0027065 | bdi-miR169e-3p | 2 | _...... | 7 | 85 |
| MIMAT0021024 | hsa-miR-5002-3p | 7 | _...... | 2 | 85 |
| MIMAT0020469 | bfl-miR-4883 | 6 | ......_ | 1 | 85 |
| MIMAT0019659 | pma-miR-4625 | 6 | ......_ | 1 | 85 |
| MIMAT0019390 | pma-miR-18b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017861 | rno-miR-3575 | 6 | ......_ | 1 | 85 |
| MIMAT0015900 | ppy-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0017512 | aly-miR169n-3p | 2 | _...... | 7 | 85 |
| MIMAT0017510 | aly-miR169m-3p | 2 | _...... | 7 | 85 |
| MIMAT0017508 | aly-miR169l-3p | 2 | _...... | 7 | 85 |
| MIMAT0017506 | aly-miR169k-3p | 2 | _...... | 7 | 85 |
| MIMAT0017504 | aly-miR169j-3p | 2 | _...... | 7 | 85 |
| MIMAT0017502 | aly-miR169i-3p | 2 | _...... | 7 | 85 |
| MIMAT0017500 | aly-miR169h-3p | 2 | _...... | 7 | 85 |
| MIMAT0014942 | mmu-miR-3105-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014610 | tgu-miR-455-3p | 2 | _...... | 7 | 85 |
| MIMAT0013960 | ssc-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0026942 | mdo-miR-455-3p | 3 | _...... | 8 | 85 |
| MIMAT0012599 | bmo-miR-2723 | 3 | ......_ | 8 | 85 |
| MIMAT0011243 | sme-miR-1992-3p | 3 | ......_ | 8 | 85 |
| MIMAT0010037 | mtr-miR2087-3p | 3 | _...... | 8 | 85 |
| MIMAT0009722 | lgi-miR-1992 | 3 | ......_ | 8 | 85 |
| MIMAT0009713 | cla-miR-1992 | 3 | ......_ | 8 | 85 |
| MIMAT0009700 | cte-miR-1992 | 3 | ......_ | 8 | 85 |
| MIMAT0008157 | ptr-miR-455 | 1 | _...... | 6 | 85 |
| MIMAT0008006 | ptr-miR-1288 | 8 | _...... | 3 | 85 |
| MIMAT0006340 | mml-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0007710 | gga-miR-1796 | 8 | ......_ | 3 | 85 |
| MIMAT0005942 | hsa-miR-1288-3p | 8 | _...... | 3 | 85 |
| MIMAT0005548 | mcmv-miR-m59-1 | 3 | ......_ | 8 | 85 |
| MIMAT0017308 | rno-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0005271 | smo-miR1113 | 3 | ......_ | 8 | 85 |
| MIMAT0026715 | mdo-miR-93-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003922 | mdv1-miR-M2-3p | 8 | _...... | 3 | 85 |
| MIMAT0003836 | bta-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0003742 | mmu-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0003459 | mmu-miR-682 | 3 | _...... | 8 | 85 |
| MIMAT0006788 | gga-miR-455-3p | 2 | _...... | 7 | 85 |
| MIMAT0004784 | hsa-miR-455-3p | 1 | _...... | 6 | 85 |
| MIMAT0026602 | mml-miR-93-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022900 | ptc-miR169u-3p | 2 | _...... | 7 | 85 |
| MIMAT0031993 | dre-miR-455-3p | 3 | _...... | 8 | 85 |
| MIMAT0015197 | zma-miR169j-3p | 2 | _...... | 7 | 85 |
| MIMAT0015196 | zma-miR169k-3p | 2 | _...... | 7 | 85 |
| MIMAT0015195 | zma-miR169i-3p | 2 | _...... | 7 | 85 |
| MIMAT0017109 | rno-miR-93-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004636 | mmu-miR-93-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004509 | hsa-miR-93-3p | 6 | ......_ | 1 | 85 |
